%*% |
inner product for matrices and vectors |
%*%.acomp |
inner product for datasets with a vector space structure |
%*%.aplus |
inner product for datasets with a vector space structure |
%*%.default |
inner product for matrices and vectors |
%*%.rmult |
inner product for datasets with vector scale |
*.acomp |
Power transform in the simplex |
*.aplus |
vectorial arithmetic for data sets with aplus class |
*.rcomp |
Arithmetic operations for compositions in a real geometry |
*.rmult |
vectorial arithmetic for datasets in a classical vector scale |
*.rplus |
vectorial arithmetic for data sets with rplus class |
+.acomp |
Perturbation of compositions |
+.aplus |
vectorial arithmetic for data sets with aplus class |
+.rcomp |
Arithmetic operations for compositions in a real geometry |
+.rmult |
vectorial arithmetic for datasets in a classical vector scale |
+.rplus |
vectorial arithmetic for data sets with rplus class |
-.acomp |
Perturbation of compositions |
-.aplus |
vectorial arithmetic for data sets with aplus class |
-.rcomp |
Arithmetic operations for compositions in a real geometry |
-.rmult |
vectorial arithmetic for datasets in a classical vector scale |
-.rplus |
vectorial arithmetic for data sets with rplus class |
/.acomp |
Power transform in the simplex |
/.aplus |
vectorial arithmetic for data sets with aplus class |
/.rcomp |
Arithmetic operations for compositions in a real geometry |
/.rmult |
vectorial arithmetic for datasets in a classical vector scale |
/.rplus |
vectorial arithmetic for data sets with rplus class |
cdt |
Centered default transform |
cdt.inv.acomp |
Centered default transform |
cdt.inv.aplus |
Centered default transform |
cdt.inv.default |
Centered default transform |
cdt.inv.rcomp |
Centered default transform |
cdt.inv.rmult |
Centered default transform |
cdt.inv.rplus |
Centered default transform |
cdt.rcomp |
Centered default transform |
cdt.rmult |
Centered default transform |
cdt.rplus |
Centered default transform |
ClamEast |
Color-size compositions of 20 clam colonies from East Bay |
ClamWest |
Color-size compositions of 20 clam colonies from West Bay |
clo |
Closure of a composition |
clr |
Centered log ratio transform |
clr2ilr |
Convert between clr and ilr, and between cpt and ipt. |
clrvar2ilr |
Convert between clr and ilr, and between cpt and ipt. |
CoDaDendrogram |
Dendrogram representation of acomp or rcomp objects |
composition.missing |
The policy of treatment of missing values in the "compositions" package |
composition.missings |
The policy of treatment of missing values in the "compositions" package |
compositions |
library(compositions) |
compositions.missing |
The policy of treatment of missing values in the "compositions" package |
compositions.missings |
The policy of treatment of missing values in the "compositions" package |
convex.rcomp |
Arithmetic operations for compositions in a real geometry |
cor |
Correlations of amounts and compositions |
cov |
Variances and covariances of amounts and compositions |
Coxite |
Compositions, depths and porosities of 25 specimens of coxite |
cpt |
Centered planar transform |
Data01 |
Compositions of 25 specimens of hongite |
Data02 |
Compositions of 25 specimens of kongite |
Data03 |
Compositions and depth of 25 specimens of boxite |
Data04 |
Compositions, depths and porosities of 25 specimens of coxite |
Data05 |
Artic lake sediment samples of different water depth |
Data06 |
AFM compositions of 23 aphyric Skye lavas |
Data07 |
Proportions of supervisor's statements assigned to different categories |
DATA08 |
Household Expenditures |
Data09 |
Steroid metabolite patterns in adults and children |
DATA10 |
Activity patterns of a statistician for 20 days |
Data11 |
White-cell composition of 30 blood samples by two different methods |
Data12 |
Yatquat fruit evaluation |
Data13 |
Firework mixtures |
Data14 |
Color-size compositions of 20 clam colonies from East Bay |
Data15 |
Color-size compositions of 20 clam colonies from West Bay |
Data16 |
Serum Protein compositions of blood samples |
Data17 |
Diagnostic probabilities |
DATA18 |
Compositions and total pebble counts of 92 glacial tills |
Data19 |
Honk Kong Pogo-Jumps Championship |
Data20 |
Proportions of sand, silt and clay in sediments specimens |
Data21 |
Permeabilities of bayesite |
Data22 |
Shifts of machine operators |
Data23 |
Blood samples |
Data24 |
Measurement of skulls |
Data25 |
Animal and vegetation measurement |
DATA31 |
Activity patterns of a statistician for 20 days |
DiagnosticProb |
Diagnostic probabilities |
dist |
Distances in variouse approaches |
dlnorm.rplus |
The multivariate lognormal distribution |
dnorm.acomp |
Normal distributions on special spaces |
dnorm.aplus |
Normal distributions on special spaces |
dnorm.rmult |
Normal distributions on special spaces |
geometricmean |
The geometric mean |
getDetectionlimit |
Gets the detection limit stored in the data set |
Glacial |
Compositions and total pebble counts of 92 glacial tills |
groupparts |
Group amounts of parts |
gsi |
Internal functions of the compositions package |
gsi.add |
Internal functions: Parallel operations of single and multiple datasets |
gsi.add2pairs |
Internal functions of the compositions package |
gsi.addclass |
Internal function: give a derived subclass to an object |
gsi.buildilrBase |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
gsi.call |
Internal functions of the compositions package |
gsi.cleanR |
Internal function: Recode missings with IEEE number and vice versa |
gsi.closespread |
Internal functions of the compositions package |
gsi.coorInfo |
Internal functions of the compositions package |
gsi.csum |
Internal function: row and column sums of matrices |
gsi.diagExtract |
Internal functions: Get the diagonal of a matrix |
gsi.diagGenerate |
Internal functions: Generate a diagonal matrix |
gsi.div |
Internal functions: Parallel operations of single and multiple datasets |
gsi.drop |
Internal functions: A conditional drop |
gsi.eps |
Internal variable: Negligible differences |
gsi.eq |
Internal function: Checking equality of IEEE special numbers |
gsi.expandrcomp |
Internal function: Scaling rcomp |
gsi.filtercall |
Calling from a function with the own parameters |
gsi.geometricmean |
The geometric mean |
gsi.getCoorInfo |
Internal functions of the compositions package |
gsi.getD |
Interal function: Get number of samples and number of parts in a compositional object |
gsi.getN |
Interal function: Get number of samples and number of parts in a compositional object |
gsi.ilrBase |
The canonical basis in the clr plane used for ilr and ipt transforms. |
gsi.ilrBase2signary |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
gsi.isSingleRow |
Internal function: Can something be considered as a single multivariate data item? |
gsi.mapfrom01 |
Internal functions: Storing integers as reals |
gsi.mapin01 |
Internal functions: Storing integers as reals |
gsi.mapmax |
Internal functions: Storing integers as reals |
gsi.mapmin |
Internal functions: Storing integers as reals |
gsi.margin |
Internal function: Compute a desired compositional margin |
gsi.merge2signary |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
gsi.mul |
Internal functions: Parallel operations of single and multiple datasets |
gsi.optimalilrBase |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
gsi.OrderIlr |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
gsi.pairrelativeMatrix |
Internal functions of the compositions package |
gsi.pairs |
Internal functions of the compositions package |
gsi.plain |
Internal function: Convert to plain vector or matrix |
gsi.plotmargin |
Internal functions of the compositions package |
gsi.plots |
Internal functions of the compositions package |
gsi.recodeC2M |
Internal function: Recode missings with IEEE number and vice versa |
gsi.recodeM2C |
Internal function: Recode missings with IEEE number and vice versa |
gsi.recodeM2Clean |
Internal function: Recode missings with IEEE number and vice versa |
gsi.reset3D |
Internal functions of the compositions package |
gsi.rsum |
Internal function: row and column sums of matrices |
gsi.setCoorInfo |
Internal functions of the compositions package |
gsi.signary2ilrBase |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
gsi.simshape |
Internal function: Reshape an object to the shape type of another |
gsi.spreadToIsoSpace |
Internal functions of the compositions package |
gsi.sub |
Internal functions: Parallel operations of single and multiple datasets |
gsi.svdsolve |
Internal function: Solves singular and non square equation systems |
gsi.textpanel |
Internal function: A panel displaying a label only |
gsi2.invperm |
Internal function: Invert a permutation |
idt |
Isometric default transform |
idt.inv.acomp |
Isometric default transform |
idt.inv.aplus |
Isometric default transform |
idt.inv.default |
Isometric default transform |
idt.inv.rcomp |
Isometric default transform |
idt.inv.rmult |
Isometric default transform |
idt.inv.rplus |
Isometric default transform |
idt.rcomp |
Isometric default transform |
idt.rmult |
Isometric default transform |
idt.rplus |
Isometric default transform |
iit |
Isometric identity transform |
ilr |
Isometric log ratio transform |
ilr2clr |
Convert between clr and ilr, and between cpt and ipt. |
ilrBase |
The canonical basis in the clr plane used for ilr and ipt transforms. |
ilrBaseList |
The canonical basis in the clr plane used for ilr and ipt transforms. |
ilrvar2clr |
Convert between clr and ilr, and between cpt and ipt. |
ilt |
Isometric log transform |
ipt |
Isometric planar transform |
is.acomp |
Check for compositional data type |
is.aplus |
Check for compositional data type |
is.BDL |
The policy of treatment of missing values in the "compositions" package |
is.MAR |
The policy of treatment of missing values in the "compositions" package |
is.MNAR |
The policy of treatment of missing values in the "compositions" package |
is.MNV |
The policy of treatment of missing values in the "compositions" package |
is.NMV |
The policy of treatment of missing values in the "compositions" package |
is.rcomp |
Check for compositional data type |
is.rmult |
Check for compositional data type |
is.rplus |
Check for compositional data type |
is.SZ |
The policy of treatment of missing values in the "compositions" package |
is.WMNAR |
The policy of treatment of missing values in the "compositions" package |
is.WZERO |
The policy of treatment of missing values in the "compositions" package |
isoPortionLines |
Isoportion- and Isoproportion-lines |
isoProportionLines |
Isoportion- and Isoproportion-lines |
MAR |
The policy of treatment of missing values in the "compositions" package |
MARvalue |
The policy of treatment of missing values in the "compositions" package |
mcor |
Metric summary statistics of real, amount or compositional data |
mcov |
Metric summary statistics of real, amount or compositional data |
mean.acomp |
Mean amounts and mean compositions |
mean.aplus |
Mean amounts and mean compositions |
mean.col |
The arithmetic mean of rows or columns |
mean.rcomp |
Mean amounts and mean compositions |
mean.rmult |
Mean amounts and mean compositions |
mean.row |
The arithmetic mean of rows or columns |
mean.rplus |
Mean amounts and mean compositions |
Metabolites |
Steroid metabolite patterns in adults and children |
missingProjector |
Returns a projector the the observed space in case of missings. |
missings |
The policy of treatment of missing values in the "compositions" package |
missingSummary |
Classify and summarize missing values in a dataset |
missingType |
Classify and summarize missing values in a dataset |
mix.2acomp |
Transformations from 'mixtures' to 'compositions' classes |
mix.2aplus |
Transformations from 'mixtures' to 'compositions' classes |
mix.2rcomp |
Transformations from 'mixtures' to 'compositions' classes |
mix.2rmult |
Transformations from 'mixtures' to 'compositions' classes |
mix.2rplus |
Transformations from 'mixtures' to 'compositions' classes |
mix.Read |
Reads a data file in a mixR format |
MNAR |
The policy of treatment of missing values in the "compositions" package |
MNARvalue |
The policy of treatment of missing values in the "compositions" package |
msd |
Metric summary statistics of real, amount or compositional data |
mul.rplus |
vectorial arithmetic for data sets with rplus class |
mvar |
Metric summary statistics of real, amount or compositional data |