name.check {geiger} | R Documentation |
This function is a general tool for checking for concordance between a data file and a phylogenetic tree. For the data, names can be specified as the names of objects in the vector, rownames of the data array or as 'x.names'. The function finds and lists all taxa present in data set but not in tree, and vice-versa.
name.check(phy, data, data.names=NULL)
phy |
an object of class "phylo" |
data |
data for tips of the tree |
data.names |
{ names of the tips in the order of the data; if this is not given, names will be taken from the names or rownames of the object data}
Tree.not.data |
Taxa in tree but not data |
Data.not.tree |
Taxa in data but not tree |
...
Luke J. Harmon
data(geospiza) attach(geospiza) name.check(geospiza.tree, geospiza.data)