plot.qb.multloci {qtlbim}R Documentation

Summaries of multiple loci on a chromosome.

Description

Summaries and detailed scatterplot showing all loci found in MCMC samples for a chromosome.

Usage

qb.multloci(qbObject, chr)
## S3 method for class 'qb.multloci':
plot(x, amount = 0.75, cex, ... )
## S3 method for class 'qb.multloci':
print(x, ... )
## S3 method for class 'qb.multloci':
summary(object, ... )

Arguments

qbObject Object of class qb.
object Object of class qb.multloci.
x Object of class qb.multloci.
chr Identifier for one chromosome.
amount Amount to jitter points.
cex Character expansion of plot symbols.
... Parameters to methods.

Details

Find multiple loci in MCMC samples for chromosome chr. Produce scatter plot, density plots and histogram of counts with generic plot or show numerical summary. The plot provides position detail complementary to plot.qb.scantwo.

Author(s)

Brian S. Yandell, yandell@stat.wisc.edu

References

http://www.qtlbim.org

See Also

plot.qb, qb.scantwo

Examples


temp <- qb.multloci(qbExample, 1)
summary(temp)
plot(temp)

[Package qtlbim version 1.6.5 Index]