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| TipDatingBeast-package | Tip dating of phylogenetic trees with BEAST |
| clusters.Flu.csv | Cluster structure example input/output file for Beast 1 |
| clusters2.Flu.csv | Cluster structure example input/output file for Beast 2 |
| Flu.xml | Example BEAST 1 input file |
| Flu2.xml | Example BEAST 2 input file |
| LISTTAXA | List taxa names present in the BEAST input file |
| ListTaxa | List taxa names present in the BEAST input file |
| RANDOMCLUSTER | randomize dates among tips in the BEAST input file |
| RandomCluster | randomize dates among tips in the BEAST input file |
| RANDOMCLUSTER2 | randomize dates among tips in the BEAST input file |
| RandomCluster2 | randomize dates among tips in the BEAST input file |
| RANDOMDATES | randomize dates among tips in the BEAST input file |
| RandomDates | randomize dates among tips in the BEAST input file |
| RANDOMDATES2 | randomize dates among tips in the BEAST input file |
| RandomDates2 | randomize dates among tips in the BEAST input file |
| TAXAOUT | generates input files for leave-one-out analyses in BEAST |
| TaxaOut | generates input files for leave-one-out analyses in BEAST |
| TAXONOUT | single Taxon out input file for leave-one-out analysis in BEAST |
| TaxonOut | single Taxon out input file for leave-one-out analysis in BEAST |
| TipDatingBeast | Tip dating of phylogenetic trees with BEAST |