aSPU |
Sum of Powered Score (SPU) tests and adaptive SPU (aSPU) test for single trait - SNP set association. |
aSPUpath |
Pathway based Sum of Powered Score tests (SPUpath) and adaptive SPUpath (aSPUpath) test for single trait - pathway association. |
aSPUs |
Sum of Powered Score (SPUs) tests and adaptive SPU (aSPUs) test for single trait - SNP set association with GWAS summary statistics. |
aSPUsPath |
Pathway based Sum of Powered Score tests (SPUsPath) and adaptive SPUpath (aSPUsPath) test for single trait - pathway association with GWAS summary statistics. |
aSPUw |
Inverse variance weighted Sum of Powered Score tests (SPUw) and adaptive SPUw (aSPUw) test for single trait - SNP set association. |
estcov |
estcov |
exdat |
An example data set |
GATES2 |
Gene-based Association Test that uses an extended Simes procedure (GATES) for single trait - SNP set association |
GatesSimes |
GATES-Simes test for single trait - pathway association. |
GEEaSPU |
The SPU and aSPU tests for multiple traits - single SNP association in generalized estimating equations. |
getlogitp |
Get the p-values of the multiple SNPs based on the Wald test in a logistic regresion model. |
Hyst |
HYST (Hybrid Set-based Test) for single trait - pathway association |
kegg9 |
A subset of coronary artery disease (CAD) data |
minP |
minP test. |
MTaSPUs |
The SPU and aSPU tests for multiple traits - single SNP association with GWAS summary statistics. |
simPathAR1Snp |
Simulating a pathway with multiple SNPs. |