A B C D F G H I M N O P Q R S T V W X Z
aux.file-method | Extract Image aux.file attribute |
aux.file-methods | Extract Image aux.file attribute |
bitpix-method | Extract Image bitpix attribute |
bitpix-methods | Extract Image bitpix attribute |
cal.max-method | Extract Image cal.max attribute |
cal.max-methods | Extract Image cal.max attribute |
cal.min-method | Extract Image cal.min attribute |
cal.min-methods | Extract Image cal.min attribute |
checkimg | Force object to filename with .nii extension |
checkimg-method | Force object to filename with .nii extension |
checkimg-methods | Force object to filename with .nii extension |
checknii | Force object to filename with .nii extension |
checknii-method | Force object to filename with .nii extension |
checknii-methods | Force object to filename with .nii extension |
checkout | Determine of Q and S forms are consistent |
check_file | Wrapper for getForms with filename |
check_nifti | Check if nifti image or read in a nifti image |
check_nifti-method | Check if nifti image or read in a nifti image |
check_nifti-methods | Check if nifti image or read in a nifti image |
check_outfile | Check output filename |
cog | Image Center of Gravity |
colorbar | Add a colorbar to an ortho2 object |
copyNIfTIHeader | Copy NIfTI Header to an array |
datatype | Change Data type for img |
datatype-method | Extract Image datatype attribute |
datatype-methods | Extract Image datatype attribute |
datatyper | Change Data type for img |
data_type-method | Extract Image data_type attribute |
data_type-methods | Extract Image data_type attribute |
descrip-method | Extract Image descrip attribute |
descrip-methods | Extract Image descrip attribute |
dim_-method | Extract Image dim_ attribute |
dim_-methods | Extract Image dim_ attribute |
double_ortho | Double Orthographic Display |
dropEmptyImageDimensions | Drop Empty Image Dimensions |
fast | FSL FAST |
fast.help | FAST help |
file_imgext | Get Image file extension |
flirt | Register using FLIRT |
flirt.help | FLIRT help |
flirt_apply | Apply Warp from FLIRT |
flirt_apply.help | FLIRT help |
fnirt | Register using FNIRT |
fnirt.help | FNIRT help |
fnirt_with_affine | Register using FNIRT, but doing Affine Registration as well |
fnirt_with_affine_apply | Applies FLIRT then FNIRT transformations |
fslabs | Absolute Value Image using FSL |
fslabs.help | fslabs Help |
fslacos | Arc Cosine Transform Image using FSL |
fslacos.help | fslacos Help |
fsladd | Add Images using FSL |
fsladd.help | fsladd Help |
fslasin | Arc Sine Transform Image using FSL |
fslasin.help | fslasin Help |
fslatan | Arc Tangent Transform Image using FSL |
fslatan.help | fslatan Help |
fslbet | Use FSL's Brain Extraction Tool (BET) |
fslbet.help | Help for FSL BET |
fslbin | Binarize Image using FSL |
fslbin.help | fslbin Help |
fslbinv | Binarized Inverse Image using FSL |
fslbinv.help | fslbinv Help |
fslchfiletype | FSL Change file type |
fslchfiletype.help | fslchfiletype help |
fslcmd | FSL Command Wrapper |
fslcog | Image Center of Gravity (FSL) |
fslcos | Cosine Transform Image using FSL |
fslcos.help | fslcos Help |
fslcpgeom | FSL Copy Geometry |
fslcpgeom.help | fslcpgeom help |
fsldilate | Dilate image using FSL |
fsldir | Get FSL's Directory |
fsldiv | Divide Images using FSL |
fsldiv.help | fsldiv Help |
fsledge | Edge Strength Image using FSL |
fsledge.help | fsledge Help |
fslerode | Erode image using FSL |
fslerode.help | fslerode Help |
fslexp | Exponentiate Image using FSL |
fslexp.help | fslexp Help |
fslfill | Fill image holes |
fslfill.help | fslfill Help |
fslfill2 | Fill image holes with dilation then erosion |
fslhd | Get NIfTI header using FSL |
fslhd.help | FSLhd help |
fslhd.parse | Parse FSL Header |
fslhelp | Wrapper for getting fsl help |
fslindex | Index Image using FSL |
fslindex.help | fslindex Help |
fsllog | Log Transform Image using FSL |
fsllog.help | fsllog Help |
fslmask | Mask image using FSL |
fslmask.help | fslmask Help |
fslmaths | FSL Maths |
fslmaths.help | FSL Maths Help |
fslmerge | Merge images using FSL |
fslmerge.help | FSLMerge help |
fslmul | Multiply Images using FSL |
fslmul.help | fslmul Help |
fslnan | Replace NaNs in Image using FSL |
fslnan.help | fslnan Help |
fslnanm | Mask NaNs in Image using FSL |
fslnanm.help | fslnanm Help |
fslorient | FSL Orient |
fslorient.help | fslorient help |
fslrand | Add Random Uniform Noise Image using FSL |
fslrand.help | fslrand Help |
fslrandn | Add Random Standard Guassian Noise Image using FSL |
fslrandn.help | fslrandn Help |
fslrange | Get range of an image |
fslrange.help | FSL Stats Help |
fslrecip | Reciprocal Image using FSL |
fslrecip.help | fslrecip Help |
fslrem | Modulus Remainder of 2 Images using FSL |
fslrem.help | fslrem Help |
fslreorient2std | FSL Orient to MNI |
fslreorient2std.help | fslreorient2std help |
fslsin | Sine Transform Image using FSL |
fslsin.help | fslsin Help |
fslsmooth | Gaussian smooth image using FSL |
fslsmooth.help | fslsmooth Help |
fslsqr | Square Image using FSL |
fslsqr.help | fslsqr Help |
fslsqrt | Square Root Image using FSL |
fslsqrt.help | fslsqrt Help |
fslstats | FSL Stats |
fslstats.help | FSL Stats Help |
fslsub | Subtract Images using FSL |
fslsub.help | fslsub Help |
fslsub2 | Subsample image by factor of 2 |
fslsub2.help | fslsub2 Help |
fslsum | FSL Sum |
fslswapdim | FSL Swap Dimensions |
fslswapdim.help | fslswapdim help |
fsltan | Tangent Transform Image using FSL |
fsltan.help | fsltan Help |
fslthresh | Threshold an image |
fslthresh.help | fslthresh Help |
fslval | Get value from FSL header |
fslval.help | fslval help |
fslview | Open image in FSLView |
fslview.help | FSLView help |
fslvol | FSL Volume in mL (or cubic centimeters) |
fsl_anat | FSL Anatomical Processing Script |
fsl_anat.help | fsl_anat help |
fsl_applywarp | Apply Warp from FNIRT |
fsl_applywarp.help | FSL applywarp help |
fsl_biascorrect | FSL Bias Correct |
get.fsl | Create command declaring FSLDIR |
get.fsloutput | Determine FSL output type |
get.imgext | Determine extension of image based on FSLOUTPUTTYPE |
getForms | Get Q and S Forms of orientation matrix |
have.fsl | Logical check if FSL is accessible |
intent_code-method | Extract Image intent_code attribute |
intent_code-methods | Extract Image intent_code attribute |
intent_name-method | Extract Image intent_name attribute |
intent_name-methods | Extract Image intent_name attribute |
intent_p1-method | Extract Image intent_p1 attribute |
intent_p1-methods | Extract Image intent_p1 attribute |
intent_p2-method | Extract Image intent_p2 attribute |
intent_p2-methods | Extract Image intent_p2 attribute |
intent_p3-method | Extract Image intent_p3 attribute |
intent_p3-methods | Extract Image intent_p3 attribute |
magic-method | Extract Image magic attribute |
magic-methods | Extract Image magic attribute |
mask_img | Mask nifti Image |
melodic | Run MELODIC ICA |
melodic.help | MELODIC help |
newnii | Resets image parameters for a copied nifti object |
niftiarr | Make new nifti from array |
nii.stub | Grab nii file stubname |
ortho2 | Orthographic Display, added options |
ortho_diff | Plot differences for Prediction and Gold Standard |
pixdim-method | Extract Image pixdim attribute |
pixdim-methods | Extract Image pixdim attribute |
qform,character | Extract NIfTI 3D Image Orientation |
qform-method | Extract NIfTI 3D Image Orientation |
qform_code-method | Extract Image qform_code attribute |
qform_code-methods | Extract Image qform_code attribute |
readNIfTI2 | readNIfTI with default non-reoirientation |
readnii | readNIfTI with default non-reoirientation |
rescale_img | Image Rescaler |
robust_window | Window image based on quantiles of Image |
scl_inter-method | Extract Image scl_inter attribute |
scl_inter-methods | Extract Image scl_inter attribute |
scl_slope-method | Extract Image scl_slope attribute |
scl_slope-methods | Extract Image scl_slope attribute |
sform,character | Extract NIfTI 3D Image Orientation |
sform-method | Extract NIfTI 3D Image Orientation |
sform_code-method | Extract Image sform_code attribute |
sform_code-methods | Extract Image sform_code attribute |
sizeof_hdr-method | Extract Image sizeof_hdr attribute |
sizeof_hdr-methods | Extract Image sizeof_hdr attribute |
slice_code-method | Extract Image slice_code attribute |
slice_code-methods | Extract Image slice_code attribute |
slice_duration-method | Extract Image slice_duration attribute |
slice_duration-methods | Extract Image slice_duration attribute |
slice_end-method | Extract Image slice_end attribute |
slice_end-methods | Extract Image slice_end attribute |
slice_start-method | Extract Image slice_start attribute |
slice_start-methods | Extract Image slice_start attribute |
susan | FSL SUSAN noise reduction |
susan.help | FSL SUSAN Help |
tempimg | Create temporary nii.gz file for FSL |
toffset-method | Extract Image toffset attribute |
toffset-methods | Extract Image toffset attribute |
vox_offset-method | Extract Image vox_offset attribute |
vox_offset-methods | Extract Image vox_offset attribute |
window_img | nifti image windower |
writeNIfTI2 | writeNIfTI with default non-reoirientation |
writenii | writeNIfTI with default non-reoirientation |
xyz | Image Center of Gravity Wrapper |
zscore_img | Get Z-score over a margin of an img |