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| metacom-package | Pattern-based Analysis of Metacommunity Structure |
| BoundaryClump | Determines Boundary Clumping |
| Coherence | Calculates Coherence of Interaction Matrix |
| IdentifyStructure | Classifies Metacommunities |
| Imagine | Produces Interaction Matrix Plot |
| metacom | Pattern-based Analysis of Metacommunity Structure |
| Metacommunity | Analysis of the "Elements of Metacommunity Structure" |
| MetaImportance | Determine Importance of Each Node on Metacommunity Structure |
| Modularity | Calculates Barber's Bipartite Modularity |
| NullMaker | Null Matrix Creator |
| OrderMatrix | Ordinates Interaction Matrix |
| TestMatrices | Interaction Matrices Used to Test Package Functions |
| Turnover | Determines Species Turnover |