Calculate the NLTT Statistic


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Documentation for package ‘nLTT’ version 1.1.1

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nLTT-package Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves
ABC_SMC_nLTT A function to perform Approximate Bayesian Computation within an Sequential Markov Chain (ABC-SMC), for diversification analysis of phylogenetic trees.
exampleTrees example trees to test the functionality of the package
MCMC_nLTT Code to perform Metropolis-Hastings MCMC for a diversification model, given a phylogenetic tree. This function was used in the MEE paper to calculate the likelihood reference estimates.
nLTT Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves
nLTT.lines Normalized version of the ape function ltt.lines.
nLTT.plot Normalized version of the ape function ltt.plot
nLTTstat Calculate the difference between two normalized Lineage-Through-Time curves, given two phylogenetic trees.