Functions for Calculating Ontological Similarities


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Documentation for package ‘ontologySimilarity’ version 1.0

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ontologySimilarity-package Functions for Calculating Ontological Similarities
get_sim Calculate the group similarity of a set of row/column indices
get_similarity_rank_matrix Get matrix of similarity rank from similarity matrix
get_sim_grid Get similarity matrix from a term-to-term similarity matrix between two sets of term sets
get_sim_mat Get similarity matrix from a term similarity matrix
get_sim_p Get similarity p-value
get_sim_sample Get random sample of group similarities for groups of given size
get_sim_to_profile_p Get p-value for best-match-average similarity between two term sets
get_stratified_sim_p Get stratified similarity p-value
get_stratified_sim_p_sorted Get stratified similarity p-value (sorted)
get_term_set_to_term_sims Get 'term sets to term' similarity matrix
get_term_sim_mat Get term-term similarity matrix
lin Calculate Lin similarity score of two term sets
ontologySimilarity Functions for Calculating Ontological Similarities
resnik Calculate Resnik similarity score of two term sets