Phylogenetic Comparative Methods for Function-Valued and Other High-Dimensional Traits


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Documentation for package ‘phylocurve’ version 1.3.0

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phylocurve-package Phylogenetic Comparative Methods for Function-Valued and Other High-Dimensional Traits
compare.multivar.rate.mult Compare multiple multivariate evolutionary rates
compare.rate.mult Compare evolutionary rates
get_aligned_function_data Estimate aligned data for function-valued traits
get_tip_coefficients Estimate regression coefficients for tip species curves
GP.fit Fit Gaussian process curves to species data
K.mult Multivariate phylogenetic signal
nonlinear.fit Fit nonlinear curves to species data
pgls.mult Multivariate phylogenetic generalized least squares
phylocurve Ancestral curve reconstruction for logistic regression (glm with logit link)
phylocurve.generalized Align curves of any shape
phylocurve.trim Trim aligned curves
polynomial.fit Fit polynomial curves to species data using stepwise regression
print.lr.test Print lr.test
print.rate.mult Print rate.mult
rate.mult Estimate multivariate evolutionary rates and models
sim.curves Simulate function-valued curve evolution
sim.mult Simulate multivariate trait evolution