Using Gene Expression Data to Improve Flux Balance Analysis Predictions


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Documentation for package ‘sybilEFBA’ version 1.0.2

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sybilEFBA-package Use gene expression data to improve Flux Balance Analysis predictions
eFBA_gene Function: eFBA
eFBA_rxn Function: eFBA
FECorr Function: FECorr: Flux Expression Correlation
findFluxGeneExpr function to find minimum set of required genes to get a given flux distribution
findMDCFlux find Manhaten-Distance-Closest Flux
gene2Rule get reaction expression state from gene expression
iAF1260 Escherichia coli Metabolic Model iAF1260
iMM904 Saccharomyces cerevisiae Metabolic Model
iND750 Saccharomyces cerevisiae Metabolic Model iND750
sybilEFBA Use gene expression data to improve Flux Balance Analysis predictions