Detecting Differentially Expressed Genes in Time Course RNA-Seq Data


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Documentation for package ‘timeSeq’ version 1.0.1

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timeSeq_1.0.1-package Statistical Inference for Time Course RNA-Seq Data using a Negative Binomial Mixed-Effects Model
geneset.fit Object returned by timeSeq.geneset in the simualtion example
Idgf2 Example Data in Vignette
model.fit Object returned by timeSeq in the simualtion example
timeSeq Statistical Inference for Time Course RNA-Seq Data using a Negative Binomial Mixed-Effects Model
timeSeq.geneset Differentially Expressed Gene Sets Detection
timeSeq.genesetscreeplot Scree Plot of Kullback-Leibler Distance Ratios for Gene Sets
timeSeq.heatmap Heatmap of the Most Significant NDPE Genes
timeSeq.permutate Permutation for Significance Testing
timeSeq.plot Display the Significant NDPE Genes
timeSeq.screeplot Scree Plot of Kullback Leibler Distance Ratios
timeSeq.sort Sort NDPE Genes by Kullback Leibler Distance Ratios
timeSeq_1.0.1 Statistical Inference for Time Course RNA-Seq Data using a Negative Binomial Mixed-Effects Model