Structural Equation Modelling in R with OpenMx


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Documentation for package ‘umx’ version 1.1.5

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C D E G L P Q R S U V X

umx-package Helper Functions for Structural Equation Modelling in OpenMx

-- C --

confint.MxModel Get confidence intervals from an MxModel

-- D --

dl_from_dropbox dl_from_dropbox

-- E --

ex9_6 A multilevel dataset.
extractAIC.MxModel extractAIC from MxModel

-- G --

getOpenMx getOpenMx

-- L --

logLik.MxModel logLik.MxModel

-- P --

parameters umxGetParameters
plot umxPlotACE
plot.MxModel Create a figure from an MxModel
plot.MxModel.ACE umxPlotACE
plot.MxModel.ACEcov umxPlotACEcov
plot.MxModel.CP umxPlotCP
plot.MxModel.GxE umxPlotGxE
plot.MxModel.IP umxPlotIP

-- Q --

qm qm

-- R --

reliability reliability
residuals.MxModel Get residuals from an MxModel
RMSEA Generic RMSEA function
RMSEA.MxModel RMSEA function for MxModels
RMSEA.summary.mxmodel RMSEA function for MxModels

-- S --

summaryAPA summaryAPA

-- U --

umx Helper Functions for Structural Equation Modelling in OpenMx
umx-deprecated Deprecated. May already stop() code and ask to be updated. May be dropped entirely in future.
umxACE umxACE
umxACEcov umxACEcov
umxACESexLim umxACESexLim
umxAdd1 umxAdd1
umxAPA summaryAPA
umxCF_SexLim umxCF_SexLim
umxCI umxCI
umxCI_boot umxCI_boot
umxCompare umxCompare
umxCov2cor umxCov2cor
umxCovData umxCovData
umxCP umxCP
umxDiagnose mxDiagnostic
umxDrop1 umxDrop1
umxEFA umxEFA
umxEquate umxEquate
umxEval umxEval
umxExpCov umxExpCov
umxExpMeans umxExpMean
umxFactor umxFactor
umxFitIndices umxFitIndices
umxFixAll umxFixAll
umxGetParameters umxGetParameters
umxGxE umxGxE
umxGxE_window umxGxE_window
umxHetCor umxHetCor
umxIP umxIP
umxJiggle umxJiggle
umxLabel umxLabel
umxLatent umxLatent
umxMI umxMI
umxModify umxModify
umxPadAndPruneForDefVars umxPadAndPruneForDefVars
umxPath umxPath: Flexible specification of sem paths
umxPlot Create a figure from an MxModel
umxPlotACE umxPlotACE
umxPlotACEcov umxPlotACEcov
umxPlotCP umxPlotCP
umxPlotGxE umxPlotGxE
umxPlotIP umxPlotIP
umxRAM umxRAM
umxReduce umxReduce
umxReRun umxModify
umxRun umxRun
umxSetParameters umxSetParameters
umxSummary umxSummary.default
umxSummary.MxModel umxSummary.MxModel
umxSummary.MxModel.ACE umxSummaryACE
umxSummary.MxModel.ACEcov umxSummaryACEcov
umxSummary.MxModel.CP umxSummaryCP
umxSummary.MxModel.GxE umxSummaryGxE
umxSummary.MxModel.IP umxSummaryIP
umxSummaryACE umxSummaryACE
umxSummaryACEcov umxSummaryACEcov
umxSummaryCP umxSummaryCP
umxSummaryGxE umxSummaryGxE
umxSummaryIP umxSummaryIP
umxThresholdMatrix umxThresholdMatrix
umxUnexplainedCausalNexus umxUnexplainedCausalNexus
umxValues umxValues
umx_add_variances umx_add_variances
umx_aggregate umx_aggregate
umx_APA_model_CI umx_APA_model_CI
umx_APA_pval umx_APA_pval
umx_apply umx_apply
umx_as_numeric umx_as_numeric
umx_check umx_check
umx_checkpoint umx_set_checkpoint
umx_check_model umx_check_model
umx_check_names umx_check_names
umx_check_OS umx_check_OS
umx_check_parallel umx_check_parallel
umx_cont_2_ordinal umx_cont_2_ordinal
umx_cor umx_cor
umx_cov2raw Turn a cov matrix into raw data
umx_cov_diag umx_cov_diag
umx_default_option umx_default_option
umx_drop_ok umx_drop_ok
umx_explode umx_explode - like the php function 'explode'
umx_fake_data umx_fake_data
umx_find_object umx_find_object
umx_fix_first_loadings umx_fix_first_loadings
umx_fix_latents umx_fix_latents
umx_fun_mean_sd umx_fun
umx_get_bracket_addresses get mat[r,c] style cell address from an mxMatrix
umx_get_checkpoint umx_get_checkpoint
umx_get_cores umx_get_cores
umx_get_optimizer umx_get_optimizer
umx_grep umx_grep
umx_has_been_run umx_has_been_run
umx_has_CIs umx_has_CIs
umx_has_means umx_has_means
umx_has_square_brackets umx_has_square_brackets
umx_is_cov umx_is_cov
umx_is_endogenous umx_is_endogenous
umx_is_exogenous umx_is_exogenous
umx_is_MxMatrix umx_is_MxMatrix
umx_is_MxModel umx_is_MxModel
umx_is_ordered umx_is_ordered
umx_is_RAM umx_is_RAM
umx_lower2full umx_lower2full
umx_make_bin_cont_pair_data umx_make_bin_cont_pair_data
umx_make_TwinData umx_make_TwinData
umx_means umx_means
umx_merge_CIs umx_merge_CIs
umx_move_file umx_move_file
umx_msg umx_msg
umx_names umx_names
umx_object_as_str umx_object_as_str
umx_open umx_open
umx_paste_names umx_paste_names
umx_pb_note umx_pb_note
umx_print umx_print
umx_RAM_ordinal_objective umx_RAM_ordinal_objective
umx_read_lower Read lower-triangle of data matrix from console or file
umx_rename umx_rename
umx_rename_file umx_rename_file
umx_reorder umx_reorder
umx_residualize umx_residualize
umx_rot umx_rot
umx_round umx_round
umx_scale umx_scale
umx_scale_wide_twin_data umx_scale_wide_twin_data
umx_set_auto_plot umx_set_auto_plot
umx_set_auto_run umx_set_auto_run
umx_set_checkpoint umx_set_checkpoint
umx_set_cores umx_set_cores
umx_set_optimizer umx_set_optimizer
umx_show umx_show
umx_sql_from_excel umx_sql_from_excel
umx_standardize_ACE umx_standardize_ACE
umx_standardize_ACEcov umx_standardize_ACEcov
umx_standardize_CP umx_standardize_CP
umx_standardize_IP umx_standardize_IP
umx_standardize_RAM umx_standardize_RAM
umx_string_to_algebra umx_string_to_algebra
umx_swap_a_block umx_swap_a_block
umx_time umx_time
umx_trim umx_trim
us_skinfold_data Anthropometric data on twins

-- V --

vcov.MxModel umxExpCov

-- X --

xmuHasSquareBrackets xmuHasSquareBrackets
xmuLabel_Matrix xmuLabel_Matrix (not a user function)
xmuLabel_MATRIX_Model xmuLabel_MATRIX_Model (not a user function)
xmuLabel_RAM_Model xmuLabel_RAM_Model (not a user function)
xmuMakeDeviationThresholdsMatrices Make deviation threshold matrics
xmuMakeOneHeadedPathsFromPathList xmuMakeOneHeadedPathsFromPathList
xmuMakeThresholdsMatrices xmuMakeThresholdsMatrices (not a user function)
xmuMakeTwoHeadedPathsFromPathList xmuMakeTwoHeadedPathsFromPathList
xmuMaxLevels xmuMaxLevels
xmuMI xmuMI
xmuMinLevels xmuMinLevels
xmuPropagateLabels xmuPropagateLabels (not a user function)
xmu_dot_make_paths xmu_dot_make_paths (not for end users)
xmu_dot_make_residuals xmu_dot_make_residuals (not for end users)
xmu_start_value_list Make start values