aic |
Accesor and replacement methods for slots of complex objects |
aic,FLSR-method |
Class FLSR |
aic-methods |
Accesor and replacement methods for slots of complex objects |
aic<-,FLSR,numeric-method |
Class FLSR |
apply,FLBiol,list,function-method |
Class FLBiol |
apply,FLIndex,list,function-method |
Class FLIndex |
apply,FLQuant,ANY,ANY-method |
FLQuant class and methods |
apply,FLStock,vector,function-method |
Class FLStock for fish stock data and modelling output |
areaMeans |
Common summary operations for FLQuants |
areaSums |
Common summary operations for FLQuants |
as.data.frame,FLQuant,ANY,ANY-method |
FLQuant class and methods |
as.data.frame,FLQuants,ANY,missing-method |
Class "FLQuants" |
as.data.frame,FLStock,ANY,ANY-method |
Class FLStock for fish stock data and modelling output |
as.FLBiol |
Method for creating an FLBiol object from other classes |
as.FLBiol,FLBiol-method |
Method for creating an FLBiol object from other classes |
as.FLBiol-methods |
Method for creating an FLBiol object from other classes |
as.FLFleet |
as.FLFleet method |
as.FLFleet,FLStock-method |
as.FLFleet method |
as.FLFleet-method |
as.FLFleet method |
as.FLIndex |
Method for creating an FLIndex object from other classes |
as.FLIndex,FLFleet-method |
Method for creating an FLIndex object from other classes |
as.FLIndex-methods |
Method for creating an FLIndex object from other classes |
as.FLQuant |
as.FLQuant |
as.FLQuant,array-method |
as.FLQuant |
as.FLQuant,data.frame-method |
as.FLQuant |
as.FLQuant,FLQuant-method |
as.FLQuant |
as.FLQuant,matrix-method |
as.FLQuant |
as.FLQuant,vector-method |
as.FLQuant |
as.FLQuant-methods |
as.FLQuant |
as.FLSR |
Method for creating an FLSR object from other classes. |
as.FLSR,FLBiol-method |
Class FLBiol |
as.FLSR,FLSR-method |
Method for creating an FLSR object from other classes. |
as.FLSR,FLStock-method |
Class FLStock for fish stock data and modelling output |
as.FLStock |
FLStock |
as.FLStock,FLFleet-method |
FLStock |
as.FLStock,FLFleets-method |
Class FLFleets |
as.FLStock,FLStock-method |
FLStock |
barchart,formula,FLQuant-method |
FLCore lattice methods |
bevholt |
Stock-recruitment model function |
bkey |
Lattice style bubble plots |
bkey,list-method |
Lattice style bubble plots |
bkey-methods |
Lattice style bubble plots |
bt4 |
FLCore datasets |
bubbles |
Lattice style bubble plots |
bubbles,FLQuant-method |
Lattice style bubble plots |
bubbles,FLQuants-method |
Lattice style bubble plots |
bubbles,formula,FLQuant-method |
Lattice style bubble plots |
bubbles,formula,FLQuants-method |
Class "FLQuants" |
bubbles-methods |
Lattice style bubble plots |
bwplot,formula,FLQuant-method |
FLCore lattice methods |
catch |
Accesor and replacement methods for slots of complex objects |
catch,FLCatch-method |
Class FLCatch |
catch,FLQuant-method |
FLQuant class and methods |
catch,FLStock-method |
Class FLStock for fish stock data and modelling output |
catch-methods |
Accesor and replacement methods for slots of complex objects |
catch.n |
Accesor and replacement methods for slots of complex objects |
catch.n,FLCatch-method |
Class FLCatch |
catch.n,FLIndex-method |
Class FLIndex |
catch.n,FLStock-method |
Class FLStock for fish stock data and modelling output |
catch.n-methods |
Accesor and replacement methods for slots of complex objects |
catch.n<-,FLCatch,FLQuant-method |
Class FLCatch |
catch.n<-,FLIndex,FLQuant-method |
Class FLIndex |
catch.n<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
catch.sel |
Accesor and replacement methods for slots of complex objects |
catch.sel,FLCatch-method |
Class FLCatch |
catch.sel-methods |
Accesor and replacement methods for slots of complex objects |
catch.sel<-,FLCatch,FLQuant-method |
Class FLCatch |
catch.wt |
Accesor and replacement methods for slots of complex objects |
catch.wt,FLCatch-method |
Class FLCatch |
catch.wt,FLIndex-method |
Class FLIndex |
catch.wt,FLStock-method |
Class FLStock for fish stock data and modelling output |
catch.wt-methods |
Accesor and replacement methods for slots of complex objects |
catch.wt<-,FLCatch,FLQuant-method |
Class FLCatch |
catch.wt<-,FLIndex,FLQuant-method |
Class FLIndex |
catch.wt<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
catch<-,FLCatch,FLQuant-method |
Class FLCatch |
catch<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
catch<-,FLStock,FLQuants-method |
Class FLStock for fish stock data and modelling output |
catchability |
Accesor and replacement methods for slots of complex objects |
catchability,FLCatch-method |
Class FLCatch |
catchability-methods |
Accesor and replacement methods for slots of complex objects |
catchability<-,FLCatch,FLQuant-method |
Class FLCatch |
computeCatch |
Methods for estimating aggregated catch time series from dissagregated data |
computeCatch,FLCatch-method |
Class FLCatch |
computeCatch,FLIndex-method |
Methods for estimating aggregated catch time series from dissagregated data |
computeCatch,FLStock-method |
Methods for estimating aggregated catch time series from dissagregated data |
computeCatch-methods |
Methods for estimating aggregated catch time series from dissagregated data |
computeDiscards |
Methods for estimating aggregated catch time series from dissagregated data |
computeDiscards,FLCatch-method |
Class FLCatch |
computeDiscards,FLStock-method |
Methods for estimating aggregated catch time series from dissagregated data |
computeDiscards-methods |
Methods for estimating aggregated catch time series from dissagregated data |
computeLandings |
Methods for estimating aggregated catch time series from dissagregated data |
computeLandings,FLCatch-method |
Class FLCatch |
computeLandings,FLStock-method |
Methods for estimating aggregated catch time series from dissagregated data |
computeLandings-methods |
Methods for estimating aggregated catch time series from dissagregated data |
covar |
Accesor and replacement methods for slots of complex objects |
covar,FLSR-method |
Class FLSR |
covar-methods |
Accesor and replacement methods for slots of complex objects |
covar<-,FLSR,matrix-method |
Class FLSR |
createFLAccesors |
Create accesor and replecement methods for slots of complex classes |
data.list |
Creates data.frame with list of values |
data.list,FLQuants-method |
Creates data.frame with list of values |
data.list,list-method |
Creates data.frame with list of values |
data.list-methods |
Creates data.frame with list of values |
desc |
Accesor and replacement methods for slots of complex objects |
desc,FLBiol-method |
Class FLBiol |
desc,FLFleet-method |
FLFleet class and methods |
desc,FLIndex-method |
Class FLIndex |
desc,FLSR-method |
Class FLSR |
desc,FLStock-method |
Class FLStock for fish stock data and modelling output |
desc-methods |
Accesor and replacement methods for slots of complex objects |
desc<-,FLBiol,character-method |
Class FLBiol |
desc<-,FLFleet,character-method |
FLFleet class and methods |
desc<-,FLIndex,character-method |
Class FLIndex |
desc<-,FLSR,character-method |
Class FLSR |
desc<-,FLStock,character-method |
Class FLStock for fish stock data and modelling output |
dimnames<-,FLQuant-method |
FLQuant class and methods |
dims |
Provide information onn the dimensions and range of an object |
dims,FLIndex-method |
Provide information onn the dimensions and range of an object |
dims,FLQuant-method |
Provide information onn the dimensions and range of an object |
dims-methods |
Provide information onn the dimensions and range of an object |
dimSums |
Common summary operations for FLQuants |
discards |
Accesor and replacement methods for slots of complex objects |
discards,FLCatch-method |
Class FLCatch |
discards,FLQuant-method |
FLQuant class and methods |
discards,FLStock-method |
Class FLStock for fish stock data and modelling output |
discards-methods |
Accesor and replacement methods for slots of complex objects |
discards.n |
Accesor and replacement methods for slots of complex objects |
discards.n,FLCatch-method |
Class FLCatch |
discards.n,FLStock-method |
Class FLStock for fish stock data and modelling output |
discards.n-methods |
Accesor and replacement methods for slots of complex objects |
discards.n<-,FLCatch,FLQuant-method |
Class FLCatch |
discards.n<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
discards.sel |
Accesor and replacement methods for slots of complex objects |
discards.sel,FLCatch-method |
Class FLCatch |
discards.sel-methods |
Accesor and replacement methods for slots of complex objects |
discards.sel<-,FLCatch,FLQuant-method |
Class FLCatch |
discards.wt |
Accesor and replacement methods for slots of complex objects |
discards.wt,FLCatch-method |
Class FLCatch |
discards.wt,FLStock-method |
Class FLStock for fish stock data and modelling output |
discards.wt-methods |
Accesor and replacement methods for slots of complex objects |
discards.wt<-,FLCatch,FLQuant-method |
Class FLCatch |
discards.wt<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
discards<-,FLCatch,FLQuant-method |
Class FLCatch |
discards<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
distribution |
Accesor and replacement methods for slots of complex objects |
distribution,FLIndex-method |
Class FLIndex |
distribution-methods |
Accesor and replacement methods for slots of complex objects |
distribution<-,FLIndex,character-method |
Class FLIndex |
dotplot,formula,FLQuant-method |
FLCore lattice methods |
harvest |
Accesor and replacement methods for slots of complex objects |
harvest,FLStock-method |
Class FLStock for fish stock data and modelling output |
harvest-methods |
Accesor and replacement methods for slots of complex objects |
harvest.spwn |
Accesor and replacement methods for slots of complex objects |
harvest.spwn,FLStock-method |
Class FLStock for fish stock data and modelling output |
harvest.spwn-methods |
Accesor and replacement methods for slots of complex objects |
harvest.spwn<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
harvest<-,FLStock,character-method |
Class FLStock for fish stock data and modelling output |
harvest<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
histogram,formula,FLQuant-method |
FLCore lattice methods |
landings |
Accesor and replacement methods for slots of complex objects |
landings,FLCatch-method |
Class FLCatch |
landings,FLQuant-method |
FLQuant class and methods |
landings,FLStock-method |
Class FLStock for fish stock data and modelling output |
landings-methods |
Accesor and replacement methods for slots of complex objects |
landings.n |
Accesor and replacement methods for slots of complex objects |
landings.n,FLCatch-method |
Class FLCatch |
landings.n,FLStock-method |
Class FLStock for fish stock data and modelling output |
landings.n-methods |
Accesor and replacement methods for slots of complex objects |
landings.n<-,FLCatch,FLQuant-method |
Class FLCatch |
landings.n<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
landings.sel |
Accesor and replacement methods for slots of complex objects |
landings.sel,FLCatch-method |
Class FLCatch |
landings.sel-methods |
Accesor and replacement methods for slots of complex objects |
landings.sel<-,FLCatch,FLQuant-method |
Class FLCatch |
landings.wt |
Accesor and replacement methods for slots of complex objects |
landings.wt,FLCatch-method |
Class FLCatch |
landings.wt,FLStock-method |
Class FLStock for fish stock data and modelling output |
landings.wt-methods |
Accesor and replacement methods for slots of complex objects |
landings.wt<-,FLCatch,FLQuant-method |
Class FLCatch |
landings.wt<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
landings<-,FLCatch,FLQuant-method |
Class FLCatch |
landings<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
lapply,FLIndices,function-method |
Class FLIndices |
m |
Accesor and replacement methods for slots of complex objects |
m,FLBiol-method |
Class FLBiol |
m,FLStock-method |
Class FLStock for fish stock data and modelling output |
m-methods |
Accesor and replacement methods for slots of complex objects |
m.spwn |
Accesor and replacement methods for slots of complex objects |
m.spwn,FLStock-method |
Class FLStock for fish stock data and modelling output |
m.spwn-methods |
Accesor and replacement methods for slots of complex objects |
m.spwn<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
m<-,FLBiol,FLQuant-method |
Class FLBiol |
m<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
mat |
Accesor and replacement methods for slots of complex objects |
mat,FLStock-method |
Class FLStock for fish stock data and modelling output |
mat-methods |
Accesor and replacement methods for slots of complex objects |
mat<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
mcf |
Make compatible "FLQuant" objects |
mcf,FLQuants-method |
Make compatible "FLQuant" objects |
mcf,list-method |
Make compatible "FLQuant" objects |
mcf-methods |
Make compatible "FLQuant" objects |
mcmc |
Accesor and replacement methods for slots of complex objects |
mcmc,FLSR-method |
Class FLSR |
mcmc-methods |
Accesor and replacement methods for slots of complex objects |
mcmc<-,FLSR,list-method |
Class FLSR |
model |
Accesor and replacement methods for slots of complex objects |
model,FLSR-method |
Class FLSR |
model-methods |
Accesor and replacement methods for slots of complex objects |
model<-,FLSR,character-method |
Class FLSR |
n |
Accesor and replacement methods for slots of complex objects |
n,FLBiol-method |
Class FLBiol |
n-methods |
Accesor and replacement methods for slots of complex objects |
n<-,FLBiol,FLQuant-method |
Class FLBiol |
name |
Accesor and replacement methods for slots of complex objects |
name,FLBiol-method |
Class FLBiol |
name,FLCatch-method |
Class FLCatch |
name,FLFleet-method |
FLFleet class and methods |
name,FLIndex-method |
Class FLIndex |
name,FLSR-method |
Class FLSR |
name,FLStock-method |
Class FLStock for fish stock data and modelling output |
name-methods |
Accesor and replacement methods for slots of complex objects |
name<-,FLBiol,character-method |
Class FLBiol |
name<-,FLCatch,character-method |
Class FLCatch |
name<-,FLFleet,character-method |
FLFleet class and methods |
name<-,FLIndex,character-method |
Class FLIndex |
name<-,FLSR,character-method |
Class FLSR |
name<-,FLStock,character-method |
Class FLStock for fish stock data and modelling output |
names,FLQuant-method |
FLQuant class and methods |
north.beam |
FLCore datasets |
params |
Accesor and replacement methods for slots of complex objects |
params,FLSR-method |
Class FLSR |
params-methods |
Accesor and replacement methods for slots of complex objects |
params<-,FLSR,matrix-method |
Class FLSR |
params<-,FLSR,vector-method |
Class FLSR |
params<-,FLSR-method |
Class FLSR |
ple4 |
FLCore datasets |
ple4sex |
FLCore datasets |
plot,FLBiol,missing-method |
Class FLBiol |
plot,FLCatch,missing-method |
Class FLCatch |
plot,FLFleet,missing-method |
FLFleet class and methods |
plot,FLIndex,missing-method |
Class FLIndex |
plot,FLIndices,missing-method |
Class FLIndices |
plot,FLQuant,missing-method |
FLQuant class and methods |
plot,FLSR,missing-method |
Class FLSR |
plot,FLStock,missing-method |
Class FLStock for fish stock data and modelling output |
predict,FLSR-method |
Class FLSR |
price |
Accesor and replacement methods for slots of complex objects |
price,FLCatch-method |
Class FLCatch |
price-methods |
Accesor and replacement methods for slots of complex objects |
price<-,FLCatch,FLQuant-method |
Class FLCatch |
qapply |
Apply a Function over the FLQuant slots of an FLR S4 object |
qapply,FLIndex,function-method |
Class FLIndex |
qapply,FLSR,function-method |
Class FLSR |
qapply,FLStock,function-method |
Class FLStock for fish stock data and modelling output |
qhstk |
Stock-recruitment model function |
quant |
Quant, first dimension of FLQuant |
quant,FLQuant-method |
FLQuant class and methods |
quant-methods |
Quant, first dimension of FLQuant |
quant<-,FLQuant-method |
FLQuant class and methods |
quantMeans |
Common summary operations for FLQuants |
quantSums |
Common summary operations for FLQuants |
quantTotals |
Common summary operations for FLQuants |
range,FLCatch-method |
Class FLCatch |
range,FLStock-method |
Class FLStock for fish stock data and modelling output |
range<-,FLCatch,numeric-method |
Class FLCatch |
range<-,FLStock,numeric-method |
Class FLStock for fish stock data and modelling output |
read.FLIndex |
Import FLIndices data from a file |
read.FLIndices |
Import FLIndices data from a file |
read.FLStock |
Import stock data from a file |
read.VPAFile |
Import stock data from a file |
rec |
Accesor and replacement methods for slots of complex objects |
rec,FLSR-method |
Class FLSR |
rec-methods |
Accesor and replacement methods for slots of complex objects |
rec<-,FLSR,FLQuant-method |
Class FLSR |
rechat |
Accesor and replacement methods for slots of complex objects |
rechat,FLSR-method |
Class FLSR |
rechat-methods |
Accesor and replacement methods for slots of complex objects |
rechat<-,FLSR,FLQuant-method |
Class FLSR |
residuals |
Accesor and replacement methods for slots of complex objects |
residuals,FLSR-method |
Class FLSR |
residuals-methods |
Accesor and replacement methods for slots of complex objects |
residuals<-,FLSR,FLQuant-method |
Class FLSR |
revenue |
Calculate the revenue of a fleet |
revenue,FLFleet-method |
FLFleet class and methods |
ricker |
Stock-recruitment model function |
se |
Accesor and replacement methods for slots of complex objects |
se,FLSR-method |
Class FLSR |
se-methods |
Accesor and replacement methods for slots of complex objects |
se<-,FLSR,numeric-method |
Class FLSR |
seasonMeans |
Common summary operations for FLQuants |
seasonSums |
Common summary operations for FLQuants |
segreg |
Stock-recruitment model function |
sel.pattern |
Accesor and replacement methods for slots of complex objects |
sel.pattern,FLIndex-method |
Class FLIndex |
sel.pattern-methods |
Accesor and replacement methods for slots of complex objects |
sel.pattern<-,FLIndex,FLQuant-method |
Class FLIndex |
setPlusGroup |
setPlusgroup for FLStock |
setunits,FLBiol-method |
Class FLBiol |
show,FLBiols-method |
Class FLBiols |
show,FLQuant-method |
FLQuant class and methods |
show,FLQuants-method |
Class "FLQuants" |
sop |
Calculates the sum of products correction |
south.beam |
FLCore datasets |
spwn |
Accesor and replacement methods for slots of complex objects |
spwn,FLBiol-method |
Class FLBiol |
spwn-methods |
Accesor and replacement methods for slots of complex objects |
spwn<-,FLBiol,FLQuant-method |
Class FLBiol |
sr |
Stock-recruitment model function |
srlkhd |
Likelihood of the S-R parameters |
ssb |
Method for calculating Spawning Stock Biomass |
ssb,FLSR-method |
Class FLSR |
ssb,FLStock-method |
Class FLStock for fish stock data and modelling output |
ssb-methods |
Accesor and replacement methods for slots of complex objects |
ssb<-,FLSR,FLQuant-method |
Class FLSR |
ssbpurec |
Method for calculating Spawning Stock Biomass per unit recruit |
ssbpurec,FLStock-method |
Class FLStock for fish stock data and modelling output |
steepvirginbiom |
Change to steepness/virgin biomass parameterisation |
stock |
Accesor and replacement methods for slots of complex objects |
stock,FLStock-method |
Class FLStock for fish stock data and modelling output |
stock-methods |
Accesor and replacement methods for slots of complex objects |
stock.n |
Accesor and replacement methods for slots of complex objects |
stock.n,FLStock-method |
Class FLStock for fish stock data and modelling output |
stock.n-methods |
Accesor and replacement methods for slots of complex objects |
stock.n<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
stock.wt |
Accesor and replacement methods for slots of complex objects |
stock.wt,FLStock-method |
Class FLStock for fish stock data and modelling output |
stock.wt-methods |
Accesor and replacement methods for slots of complex objects |
stock.wt<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
stock<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
stripplot,formula,FLQuant-method |
FLCore lattice methods |
summary,FLBiol-method |
Class FLBiol |
summary,FLBiols-method |
Class FLBiols |
summary,FLCatch-method |
Class FLCatch |
summary,FLFleet-method |
FLFleet class and methods |
summary,FLFleets-method |
Class FLFleets |
summary,FLIndex-method |
Class FLIndex |
summary,FLIndices-method |
Class FLIndices |
summary,FLQuant-method |
FLQuant class and methods |
summary,FLQuants-method |
Class "FLQuants" |
summary,FLSR-method |
Class FLSR |
summary,FLStock-method |
Class FLStock for fish stock data and modelling output |
summary,FLStocks-method |
Class FLStocks |
window |
window for FLQuants based classes |
window,FLBiol-method |
window for FLQuants based classes |
window,FLCatch-method |
window for FLQuants based classes |
window,FLFleet-method |
window for FLQuants based classes |
window,FLIndex-method |
window for FLQuants based classes |
window,FLIndices-method |
window for FLQuants based classes |
window,FLQuant-method |
window for FLQuants based classes |
window,FLStock-method |
window for FLQuants based classes |
window-methods |
window for FLQuants based classes |
write.FLStock |
Write FLStock data to a file |
wt |
Accesor and replacement methods for slots of complex objects |
wt,FLBiol-method |
Class FLBiol |
wt-methods |
Accesor and replacement methods for slots of complex objects |
wt<-,FLBiol,FLQuant-method |
Class FLBiol |