haplodata {hapsim} | R Documentation |
Creates an haplotype data object needed for simulating haplotypes with haplosim
. This object also contains some summary statistics about the real data.
haplodata(dat)
dat |
A binary matrix, rows are haplotypes and columns are binary markers |
A list containing:
freqs |
Allele frequencies |
cor |
Correlation matrix (LD coefficients) |
div |
Locus-specific diversity measure |
cov |
Covariance matrix for the normal distribution |
Giovanni Montana
Montana, G. HapSim: a simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients. 2005.
See also haplosim
data(ACEdata) # creates the haplotype object x <- haplodata(ACEdata) # simulates 100 random haplotypes y <- haplosim(100, x)