gbk2g2 {seqinr}R Documentation

Conversion of a GenBank format file into a glimmer-like one

Description

This function reads a file in GenBank format and converts the features corresponding to CDS (Coding Sequences) into a format similar to glimmer program output.

Usage

gbk2g2(gbkfile = "ftp://pbil.univ-lyon1.fr/pub/logiciel/oriloc/ct.gbk",
g2.coord = "g2.coord")

Arguments

gbkfile The name of the GenBank file
g2.coord The name of the glimmer-like file

Details

Partial CDS (either 5' or 3') and join in features are discarded.

Value

Author(s)

J.R. lobry

References

citation("seqinr")

See Also

oriloc

Examples

 ## Not run:  gbk2g2() 

[Package seqinr version 1.0-6 Index]