analogue-package | Analogue methods for palaeoecology |
analog | Analogue matching |
analogue | Analogue methods for palaeoecology |
bayesF | Bayes factors |
bootstrap | Bootstrap estimation and errors |
cma | Close modern analogues |
dissim | Extract dissimilarity coefficients from models |
dissimilarities | Extract dissimilarity coefficients from models |
distance | Flexibly calculate dissimilarity or distance measures |
fitted.mat | Fitted values of a MAT model |
join | Merge species data sets on common columns (species) |
k | Extract and set the number of analogues |
mat | Modern Analogue Technique transfer function models |
mcarlo | Monte Carlo simulation of dissimilarities |
minDC | Functions to extract and plot minimum dissimilarities |
minDC.predict.mat | Functions to extract and plot minimum dissimilarities |
plot.bayesF | Bayes factor plots |
plot.cma | Draws stripcharts of close modern analogue results |
plot.dissimilarities | Plots the distribution of extracted dissimilarities |
plot.mat | Plot diagnostics for a mat object |
plot.mcarlo | Plotting of Monte Carlo simulated dissimilarity distributions |
plot.minDC | ~~function to do ... ~~ |
plot.roc | Plot ROC curves and associated diagnostics |
predict.mat | Predict method for Modern Analogue Technique models |
print.analog | Analogue matching |
print.bayesF | Bayes factors |
print.bootstrap | Bootstrap estimation and errors |
print.cma | Close modern analogues |
print.fitted.mat | Fitted values of a MAT model |
print.mat | Modern Analogue Technique transfer function models |
print.mcarlo | Monte Carlo simulation of dissimilarities |
print.minDC | Functions to extract and plot minimum dissimilarities |
print.predict.mat | Predict method for Modern Analogue Technique models |
print.residuals.bootstrap | Extract Bootstrapped Model Residuals |
print.residuals.mat | Extract Model Residuals |
print.roc | ROC curve analysis |
print.summary.analog | Summarising analogue matching results |
print.summary.bootstrap | Summarising bootstrap resampling for MAT models |
print.summary.cma | Summarising the extraction of close modern analogues |
print.summary.mat | Summarising Modern Analogue Technique models |
print.summary.predict.mat | Summarising MAT model predictions |
reconPlot | Stratigraphic plots of palaeoenvironmental reconstructions |
reconPlot.predict.mat | Stratigraphic plots of palaeoenvironmental reconstructions |
resid.bootstrap | Extract Bootstrapped Model Residuals |
resid.mat | Extract Model Residuals |
residuals.bootstrap | Extract Bootstrapped Model Residuals |
residuals.mat | Extract Model Residuals |
rlgh | Round Loch of Glenhead Diatoms |
RMSEP | Root mean square error of prediction |
roc | ROC curve analysis |
Screeplot | Screeplots of model results |
summary.analog | Summarising analogue matching results |
summary.bootstrap | Summarising bootstrap resampling for MAT models |
summary.cma | Summarising the extraction of close modern analogues |
summary.mat | Summarising Modern Analogue Technique models |
summary.predict.mat | Summarising MAT model predictions |
swapdiat | SWAP sub-fossil diatom and pH training set |
swappH | SWAP sub-fossil diatom and pH training set |