%*% |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%,ANY,ANY-method |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%,bdsmatrix,numeric-method |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%,bdsmatrix-method |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%,gchol.bdsmatrix,numeric-method |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%,gchol.bdsmatrix-method |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%,matrix,bdsmatrix-method |
Class "bdsmatrix" |
%*%,matrix,gchol.bdsmatrix-method |
Class "gchol.bdsmatrix" |
%*%,numeric,bdsmatrix-method |
Class "bdsmatrix" |
%*%,numeric,gchol.bdsmatrix-method |
Class "gchol.bdsmatrix" |
%*%-methods |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%.bdsmatrix |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%.default |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%.gchol.bdsmatrix |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
align.pedigree |
Generate plotting information for a pedigree |
alignped1 |
Generate plotting information for a pedigree |
alignped2 |
Generate plotting information for a pedigree |
alignped3 |
Generate plotting information for a pedigree |
alignped4 |
Generate plotting information for a pedigree |
all,bdsmatrix-method |
Class "bdsmatrix" |
any,bdsmatrix-method |
Class "bdsmatrix" |
as.matrix.bdsmatrix |
a function for bdsmatrix |
as.matrix.gchol |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
as.vector.bdsmatrix |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
autohint |
Align a pedigree to print well |
bdsBlock |
Block diagonal matrices. |
bdsI |
Sparse identity matrices |
bdsmatrix |
Create a sparse symmetric block diagonal matrix object |
bdsmatrix-class |
Class "bdsmatrix" |
bdsmatrix.ibd |
Create a bdsmatrix from a list |
bdsmatrix.reconcile |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
besthint |
Create a hints matrix for a pedigree. |
coerce,bdsmatrix,matrix-method |
Class "bdsmatrix" |
coerce,bdsmatrix,vector-method |
Class "bdsmatrix" |
coerce,gchol,matrix-method |
Class "gchol" |
coerce,gchol.bdsmatrix,matrix-method |
Class "gchol.bdsmatrix" |
coxme |
Fit a mixed-effects Cox model |
coxme.control |
Control parameters for coxme |
coxme.fit |
Fit a mixed-effects Cox model |
coxme.varcheck |
Fit a mixed-effects Cox model |
diag,bdsmatrix-method |
Class "bdsmatrix" |
diag,gchol-method |
Class "gchol" |
diag,gchol.bdsmatrix-method |
Class "gchol.bdsmatrix" |
diag<-,bdsmatrix-method |
Class "bdsmatrix" |
dim,bdsmatrix-method |
Class "bdsmatrix" |
dim,gchol.bdsmatrix-method |
Class "gchol.bdsmatrix" |
dimnames,bdsmatrix-method |
Class "bdsmatrix" |
dimnames<-,bdsmatrix-method |
Class "bdsmatrix" |
familycheck |
Error check for a family classification |
gchol |
Generalized Cholesky decompostion |
gchol,matrix-method |
Methods for Function gchol in Package ‘kinship’ |
gchol-class |
Class "gchol" |
gchol-methods |
Methods for Function gchol in Package ‘kinship’ |
gchol.bdsmatrix |
Generalized Cholesky decompostion |
gchol.bdsmatrix-class |
Class "gchol.bdsmatrix" |
getCovariateFormula2 |
Linear Mixed Effects model using a kinship matrix. |
getCrossedTerms |
Linear Mixed Effects model using a kinship matrix. |
getGroupsFormula2 |
Linear Mixed Effects model using a kinship matrix. |
is.bdsmatrix |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
is.gchol.bdsmatrix |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
is.list.bdsmatrix |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
is.list.gchol.bdsmatrix |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
is.matrix.bdsmatrix |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
is.matrix.gchol.bdsmatrix |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
kindepth |
Compute a kinship matrix |
kinship |
Compute a kinship matrix |
list or NULL-class |
Class "list or NULL" |
lmekin |
Linear Mixed Effects model using a kinship matrix. |
makefamid |
Identify family groups |
makekinship |
Create a sparse kinship matrix |
Math,bdsmatrix-method |
Class "bdsmatrix" |
Math2,bdsmatrix-method |
Class "bdsmatrix" |
max,bdsmatrix-method |
Class "bdsmatrix" |
min,bdsmatrix-method |
Class "bdsmatrix" |
Ops,bdsmatrix,bdsmatrix-method |
Class "bdsmatrix" |
Ops,bdsmatrix,numeric-method |
Class "bdsmatrix" |
Ops,numeric,bdsmatrix-method |
Class "bdsmatrix" |
pedigree |
Create pedigree structure |
plot.pedigree |
plot pedigrees |
print.bdsmatrix |
Create a sparse symmetric block diagonal matrix object |
print.coxme |
Fit a mixed-effects Cox model |
print.lmekin |
Linear Mixed Effects model using a kinship matrix. |
prod,bdsmatrix-method |
Class "bdsmatrix" |
range,bdsmatrix-method |
Class "bdsmatrix" |
show,bdsmatrix-method |
Class "bdsmatrix" |
show,gchol-method |
Class "gchol" |
show,gchol.bdsmatrix-method |
Class "gchol.bdsmatrix" |
solve.bdsmatrix |
Solve a matrix equation using the generalized Cholesky decompostion |
solve.gchol |
Solve a matrix equation using the generalized Cholesky decompostion |
solve.gchol.bdsmatrix |
function solve for gchol.bdsmatrix |
strata2 |
Control parameters for coxme |
sum,bdsmatrix-method |
Class "bdsmatrix" |
unique,bdsmatrix,missing-method |
Class "bdsmatrix" |
[,bdsmatrix-method |
Class "bdsmatrix" |
[,gchol.bdsmatrix-method |
Class "gchol.bdsmatrix" |
[.pedigree |
Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |