Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses

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Documentation for package ‘ouch’ version 2.4-2

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ouch-package Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
anolis.ssd Greater Antillean anolis lizard sexual size dimorphism data.
ape2ouch Convert an "ape" tree to an "ouch" tree.
as,hansentree-method Methods of the "hansentree" class
bimac Anolis bimaculatus lizard size data.
bootstrap Methods of the "hansentree" class
bootstrap,browntree-method Fitted phylogenetic Brownian motion model
bootstrap,hansentree-method Methods of the "hansentree" class
bootstrap-browntree Fitted phylogenetic Brownian motion model
bootstrap-hansentree Methods of the "hansentree" class
brown Fit a Brownian-motion model of evolution along a phylogenetic tree
brown.dev Deprecated functions in the "ouch" package
brown.fit Deprecated functions in the "ouch" package
browntree Fitted phylogenetic Brownian motion model
browntree-class Fitted phylogenetic Brownian motion model
coef,browntree-method Fitted phylogenetic Brownian motion model
coef,hansentree-method Methods of the "hansentree" class
coef-browntree Fitted phylogenetic Brownian motion model
coef-hansentree Methods of the "hansentree" class
coerce,browntree,data.frame-method Fitted phylogenetic Brownian motion model
coerce,hansentree,data.frame-method Methods of the "hansentree" class
coerce,ouchtree,data.frame-method Phylogenetic tree object in 'ouch' format.
hansen Hansen model of evolution along a phylogenetic tree
hansen.dev Deprecated functions in the "ouch" package
hansen.fit Deprecated functions in the "ouch" package
hansen.prof Deprecated functions in the "ouch" package
hansentree hansen tree object
hansentree-class hansen tree object
hansentree-methods Methods of the "hansentree" class
is.valid.ouch.tree Deprecated functions in the "ouch" package
logLik,browntree-method Fitted phylogenetic Brownian motion model
logLik,hansentree-method Methods of the "hansentree" class
logLik-browntree Fitted phylogenetic Brownian motion model
logLik-hansentree Methods of the "hansentree" class
ouch-deprecated Deprecated functions in the "ouch" package
ouchtree Phylogenetic tree object in 'ouch' format.
ouchtree-class Phylogenetic tree object in 'ouch' format.
paint Painting selective regimes on a phylogenetic tree.
plot,browntree-method Fitted phylogenetic Brownian motion model
plot,hansentree-method Methods of the "hansentree" class
plot,ouchtree-method Phylogenetic tree object in 'ouch' format.
plot-browntree Fitted phylogenetic Brownian motion model
plot-hansentree Methods of the "hansentree" class
plot-ouchtree Phylogenetic tree object in 'ouch' format.
print,browntree-method Fitted phylogenetic Brownian motion model
print,hansentree-method Methods of the "hansentree" class
print,ouchtree-method Phylogenetic tree object in 'ouch' format.
print-browntree Fitted phylogenetic Brownian motion model
print-hansentree Methods of the "hansentree" class
print-ouchtree Phylogenetic tree object in 'ouch' format.
show,browntree-method Fitted phylogenetic Brownian motion model
show,hansentree-method Methods of the "hansentree" class
show,ouchtree-method Phylogenetic tree object in 'ouch' format.
show-browntree Fitted phylogenetic Brownian motion model
show-hansentree Methods of the "hansentree" class
show-ouchtree Phylogenetic tree object in 'ouch' format.
simulate,browntree-method Fitted phylogenetic Brownian motion model
simulate,hansentree-method Methods of the "hansentree" class
simulate-browntree Fitted phylogenetic Brownian motion model
simulate-hansentree Methods of the "hansentree" class
summary,browntree-method Fitted phylogenetic Brownian motion model
summary,hansentree-method Methods of the "hansentree" class
summary-browntree Fitted phylogenetic Brownian motion model
summary-hansentree Methods of the "hansentree" class
tree.plot Deprecated functions in the "ouch" package
update,browntree-method Fitted phylogenetic Brownian motion model
update,hansentree-method Methods of the "hansentree" class
update-browntree Fitted phylogenetic Brownian motion model
update-hansentree Methods of the "hansentree" class