aresPlot {ARES}R Documentation

Plotting an allelic richness accumulation curve

Description

Plots an allelic richness accumulation curve, on the basis of the output from aresCalc.

Usage

aresPlot(output_aresCalc, T = "mytitle")

Arguments

output_aresCalc the output matrix from aresCalc, a dataframe with three columns
T the plot title

Value

The function returns a plot of the estimated allelic richness with 95% confidence bounds.

Author(s)

Emiel van Loon

References

van Loon EE, Cleary DFR, Fauvelot C (2006) ARES: software to compare allelic richness between uneven samples. Molecular Ecology Notes, (in review)

Examples


# allelic richness of the butterfly Drupadia theda (Felder),  
# at a study site B1 in the year 1998 compared to that in 2000

data(butterfly_borneo)

b198 <- aresCalc(bb198,bootsize=4,maxsize=60)
aresPlot(b198, T="1998, B1")

b100 <- aresCalc(bb100,bootsize=4,maxsize=60)
aresPlot(b100, T="2000, B1")

# note!!! these examples use a very small bootstrap size (for speed of display).
#  A more realistic size is bootsize=200.


[Package ARES version 1.2-3 Index]