BootCL.print {BootCL}R Documentation

Display gene lists that are within windowsize consecutively in the same chromosome

Description

BootCL.print presents gene lists that are within consecutive windowsize in the same chromosome.

Usage

BootCL.print(BootP,cutoff=3,affyID.flag=TRUE)

Arguments

BootP The result from BootCL.distribution
cutoff the size of gene lists
affyID.flag

{if affyIDs are used for sample, affyID.flag=TRUE. Else if Accession IDs are used , affyID.flag=FALSE}

Value

print.list all the gene lists
select.list selected list that the size of gene lists are larger than cutoff

Examples

     library(BootCL)
     chip.name<-"HG.U133A"
     data(affy.hgu133a)
     sample.cluster<-affy.hgu133a[sample(1:1000,100),1]
     sample.ID<-find.ID(chip.name,sample.cluster,affyID.flag=TRUE) 
     Boot.Stat<-BootCL.Statistic(chip.name,sample.ID)
     Bdist<-BootCL.distribution(chip.name,Boot.Stat$sampling.count,total.sampling.count=10000)
     BootP<-BootCL.Pvalue(Boot.Stat,Bdist)
     BootCL.plot(BootP)
     BootCL.print(BootP)

[Package BootCL version 1.7 Index]