Bootstrapping test for chromosomal localization


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Documentation for package ‘BootCL’ version 1.7

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affy.chickenChip Chicken (Affymetrix) :affy.chickenChip
affy.hgfocus Human(Affymetrix) :affy.hgfocus
affy.hgu133a Human(Affymetrix) :affy.hgu133a
affy.hgu133a2 Human(Affymetrix) :affy.hgu133a2
affy.hgu133b Human(Affymetrix) :affy.hgu133b
affy.hgu133plus2 Human(Affymetrix) :affy.hgu133plus2
affy.mgu74av2 Mouse (Affymetrix) :affy.mgu74av2
affy.mgu74bv2 Mouse(Affymetrix) :affy.mgu74bv2
affy.mgu74cv2 Mouse(Affymetrix) :affy.mgu74cv2
affy.mouse4302 Mouse(Affymetrix) :affy.mouse4302
affy.mouse430a2 Mouse(Affymetrix) :affy.mouse430a2
affy.rgu34a Rat(Affymetrix) :affy.rgu34a
affy.rgu34b Rat(Affymetrix) :affy.rgu34b
affy.rgu34c Rat(Affymetrix) :affy.rgu34c
agilent.hgug4110b Human(Agilent) :agilent.hgug4110b
agilent.hgug4112a Human(Agilent) :agilent.hgug4112a
agilent.mgug4122a Mouse(Agilent) :agilent.mgug4122a
BootCL.distribution Find the bootstrap distribution
BootCL.plot Display the bootstrap distribution and p-value
BootCL.print Display gene lists that are within windowsize consecutively in the same chromosome
BootCL.Pvalue Calculate the P-value
BootCL.Statistic Calculate a measure of chromosomeal spatial bias
chickenChip Chicken(Affymetrix) :HG-U133A
codelink.hwgcod Human(CodeLink) :codelink.hwgcod
codelink.mwgcod Mouse(CodeLink) :codelink.mwgcod
codelink.rwgcod Rat(CodeLink) :codelink.rwgcod
find.ID Match affyID to Accession IDs
HG.U133A Human (Affymetrix) :HG-U133A
HG.U133B Human (Affymetrix) :HG.U133B
Hgfocus Human (Affymetrix) :Hgfocus
Hgu133A2 Human(Affymetrix) :Hgu133A2
Hgu133plus2 Human (Affymetrix) :Hgu133plus2
hgug4110b Human(Agilent) :hgug4110b
hgug4112a Human(Agilent) :hgug4112a
hwgcod Human(CodeLink) :hwgcod
MG.U74Av2 Mouse(Affymetrix) :MG.U74Av2
MG.U74Bv2 Mouse(Affymetrix) :MG.U74Bv2
MG.U74Cv2 Mouse(Affymetrix) :MG.U74Cv2
mgug4122a Mouse(Agilent) :mgug4122a
Mouse4302 Mouse(Affymetrix) :Mouse4302
Mouse430A2 Mouse(Affymetrix) :Mouse430A2
mwgcod Mouse(CodeLink) :mwgcod
RG.U34A Rat (Affymetrix) :RG.U34A
RG.U34B Rat (Affymetrix) :RG.U34B
RG.U34C Rat (Affymetrix) :RG.U34C
rwgcod Rat (CodeLink) :rwgcod
total.count.ws window size