BootCL.print {BootCL} | R Documentation |
Display gene lists that are within windowsize consecutively in the same chromosome
Description
BootCL.print presents gene lists that are within consecutive windowsize in the same chromosome.
Usage
BootCL.print(BootP,cutoff=3,affyID.flag=TRUE)
Arguments
BootP |
The result from BootCL.distribution |
cutoff |
the size of gene lists |
affyID.flag |
|
{if affyIDs are used for sample, affyID.flag=TRUE. Else if Accession IDs are used , affyID.flag=FALSE}
Value
print.list |
all the gene lists |
select.list |
selected list that the size of gene lists are larger than cutoff |
Examples
library(BootCL)
chip.name<-"HG.U133A"
data(affy.hgu133a)
sample.cluster<-affy.hgu133a[sample(1:1000,100),1]
sample.ID<-find.ID(chip.name,sample.cluster,affyID.flag=TRUE)
Boot.Stat<-BootCL.Statistic(chip.name,sample.ID)
Bdist<-BootCL.distribution(chip.name,Boot.Stat$sampling.count,total.sampling.count=10000)
BootP<-BootCL.Pvalue(Boot.Stat,Bdist)
BootCL.plot(BootP)
BootCL.print(BootP)
[Package
BootCL version 1.7
Index]