gexgo {GExMap}R Documentation

Perform a GO analysis of the tested gene list

Description

Search and analyze the GO identifiers for each idetified gene from the tested gene list and produces 3 scored lists, one for each GO (Biological processes, Cellular component and Biological function. ) This function is used or not by GExMap, called by the main function gexmap() if the variable isGO=TRUE (by default).

Usage

gexgo(list.ENS, source, res)

Arguments

list.ENS List of all identified genes
source Source data folder where is located the go.Rdata file
res Results folder where will be saved all the data files producede by the function

Details

This function is included in the GExMap package and could not be used independently.

Value

A GO.results folder is created which contains 3 files for each GO:\

detail. .txt Complete list of genes for each GO ID sorted by decreasing score
GO. .txt List of scored GO id with scores and relative proportion of each ID
GO_ .pdf Pie chart of the GO ID which score is > 1 percent

Author(s)

Nicolas Cagnard <nicolas.cagnard@inserm.fr>

See Also

GExMap


[Package GExMap version 1.0 Index]