gexgo {GExMap} | R Documentation |
Search and analyze the GO identifiers for each idetified gene from the tested gene list and produces 3 scored lists, one for each GO (Biological processes, Cellular component and Biological function. ) This function is used or not by GExMap, called by the main function gexmap() if the variable isGO=TRUE (by default).
gexgo(list.ENS, source, res)
list.ENS |
List of all identified genes |
source |
Source data folder where is located the go.Rdata file |
res |
Results folder where will be saved all the data files producede by the function |
This function is included in the GExMap package and could not be used independently.
A GO.results folder is created which contains 3 files for each GO:\
detail. .txt |
Complete list of genes for each GO ID sorted by decreasing score |
GO. .txt |
List of scored GO id with scores and relative proportion of each ID |
GO_ .pdf |
Pie chart of the GO ID which score is > 1 percent |
Nicolas Cagnard <nicolas.cagnard@inserm.fr>
GExMap