add.plot {GenABEL} | R Documentation |
Add plot of results of GWA analysis
add.plot(x, ..., df = 1, col=c("lightgreen","lightblue"), sort=TRUE, delta = 1)
x |
object of type scan.gwaa-class, as returned by scan.glm , qtscore ,
ccfast , emp.ccfast , emp.qtscore , or scan.haplo ;
or of type scan.gwaa.2D-class, as returned by scan.haplo.2D or scan.glm.2D .
|
... |
additional arguments to be passed to plot |
df |
P-value at which df to add (1, 2 or "Pc1df") |
col |
which colors to use to depict consecutive chromosomes |
sort |
whether results should be plotted after sorting by chromosome and position |
delta |
gap width between chromosomes |
No value returned.
Yurii Aulchenko
plot
,
snp.subset
,
scan.glm
,
qtscore
,
ccfast
,
emp.qtscore
,
emp.ccfast
,
scan.haplo
,
scan.haplo.2D
,
scan.glm.2D
data(srdta) a <- ccfast("bt",srdta,snps=c(1:100)) plot(a) a1 <- qtscore(bt,srdta,snps=c(1:100)) add.plot(a1,col="red",type="l")