HWE.show {GenABEL} | R Documentation |
This function displays HWE tables and shows Chi2 and exact HWE P-values
HWE.show(data, idsubset = c(1:data@gtdata@nids), snpsubset = c(1:data@gtdata@nsnps))
data |
object of class gwaa.data-class or snp.data-class |
snpsubset |
Index, character or logical vector with subset of SNPs to run analysis on.
If missing, all SNPs from data are used for analysis. |
idsubset |
Index, character or logical vector with subset of IDs to run analysis on.
If missing, all people from data/cc are used for analysis. |
Only screen output
Yurii Aulchenko
data(srdta) mc <- check.marker(srdta,p.lev=0.01,ibs.mrk=0) mc$nohwe HWE.show(data=srdta,snps=mc$nohwe)