srdta {GenABEL} | R Documentation |
srdta
contains gwaa.data object with results
on a small region of
about 2.5 Mb. 833 SNPs are typed on 2500 people.
NA rate is 95%. Sex, age, two quantitative (qt1 and
qt2) and one binary (bt) traits are available for
analysis. Run demo(srdta) and check tut-srdta.pdf
to see examples of work with this data set.
Original data files used for this set are located at
YOUR_R_LIB_LOCATION/exdata/srphenos.dat (pehnotypes),
srgenos.dat (human-readable genotypes) and srgenos.raw
(genotypes in internal format)
data(srdta)
Standard object of class gwaa.data-class
## Not run: demo(srdta) ## End(Not run) # load and work with srdta data(srdta) mc <- check.marker(data=srdta@gtdata[,1:100],redundant="all",maf=0.01,minconcordance=0.9,fdr=.1,ibs.mrk=0) plot(mc) check.trait(names(srdta@phdata),srdta)