descriptives.marker {GenABEL} | R Documentation |
Function to generate descriptive summary tables for genotypic data
descriptives.marker(data,snpsubset,idsubset,file,mafc,hwec,snpc,idcc,digits = 3)
data |
an object of snp.data-class or gwaa.data-class |
snpsubset |
Index, character or logical vector with subset of SNPs to run analysis on.
If missing, all SNPs from data are used for analysis. |
idsubset |
Index, character or logical vector with subset of IDs to run analysis on.
If missing, all people from data are used for analysis. |
file |
A string specifying the name of a file to write the tables to (default is missing). |
mafc |
vector containing desired cut-off levels for minor allele frequency |
hwec |
vector containing desired cut-off levels for exact HWE P-values |
snpc |
vector containing desired cut-off levels for SNP call rate |
idcc |
vector containing desired cut-off levels for individual SNP call rate |
digits |
number of digits to be printed |
A list containing descriptive tables and statistics
Yurii Aulchenko
data(srdta) descriptives.marker(srdta)