tdclust {GeneNT} | R Documentation |
This function does traditional clustering based on core R function hclust().
tdclust(p)
p |
p is the exponential tuning factor. The default value is 1, and it can be set to other positive integers when necessary. |
This function is written in comparison to the network constrained clustering implemented as ncclust().
This function returns a distance matrix that can be used by any distance based clustering software.
Dongxiao Zhu (http://dongxiaozhu.googlepages.com/home)
Zhu, D., Hero, A.O., Qin, Z.S. and Swaroop, A. High throughput screening of co-expressed gene pairs with controlled False Discovery Rate (FDR) and Minimum Acceptable Strength (MAS). J. Comput. Biol, in press.
## load GeneNT library library(GeneNT) ## load example dataset data(dat) ## Note, data matrix name has to be "dat" ## Regular hierarchical clustering, for example, p = 1. tdclust(1)