Relevance or Dependency network and signaling pathway discovery


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Documentation for package ‘GeneNT’ version 1.4

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BEST.kendall BLAST type search for similar co-expressions with controlled FDR and MAS using Kendall correlation statistic
BEST.pearson BLAST type search for similar co-expressions with controlled FDR and MAS using Pearson correlation statistic
cor.confint Asymptotic confidence intervals of Pearson correlation coefficient
corfdrci Two-stage screening procedure for screening gene pairs based on Pearson correlation statistic
dat Part of galactose metabolism data. Ideker et al. Science, 292:929-934
getBM Generate Pajek compatible matrix from screened gene pairs
kendall.confint Asymptotic confidence intervals of Pearson correlation coefficient
kendallfdrci Two-stage screening procedure based on Kendall correlation coefficient
ncclust Network constrained clustering
sm.name Extract gene names from data matrix
tdclust Traditional clustering