Geneland-package |
Simulation and inference for subdivided populations |
coordinates |
Example of coordinate file |
EstimateFreqNA |
Estimate frequencies of null alleles. |
FormatGenotypes |
Formatting file of genotype data. |
Fstat |
Computes F statistics on a population genetics dataset given as R object |
Fstat.output |
Computes F statistics on the output of an inference by MCMC simulation |
Geneland |
Simulation and inference for subdivided populations |
Geneland.GUI |
Graphical interface for package Geneland |
genotypes |
Example of coordinate file |
gl2gp |
Geneland to Genepop conversion |
MCMC |
Markov Chain Monte-Carlo inference under various models |
nullify |
Simulates null alleles |
PlotDrift |
Plot the drift factors |
PlotFreq |
Plot the trace of allele frequencies in present time population and optionnaly print it. |
PlotFreqA |
Plots allele frequencies in ancestral population along the MCMC run and optionally prints it |
Plotnpop |
Plot of number of populations along the MCMC run |
Plotntile |
Plot of number of tiles along the MCMC run |
PlotTessellation |
Maps of posterior probability of membership |
PosteriorMode |
Map of mode of posterior distribution of population membership |
PostProcessChain |
Computation for maps of posterior probability of population membership |
PostProcessMultChain |
Computation for maps of posterior probability of population membership |
show.simdata |
Graphical display of data simulated by simdata |
simdata |
Simulation of georeferenced genotypes under an IBD + barrier model |
simFmodel |
Simulation of multi-locus genetic data from the spatial F-model |