Gillespie's Stochastic Simulation Algorithm (SSA)


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Documentation for package ‘GillespieSSA’ version 0.5-3

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GillespieSSA-package Gillespie Stochastic Simulation Algorithm package
GillespieSSA Gillespie Stochastic Simulation Algorithm package
ssa Invoking the stochastic simulation algorithm
ssa.btl Binomial tau-leap method (BTL)
ssa.btl.diag Binomial tau-leap method (BTL) for nu-diagonalized systems
ssa.check.args Validates the arguments for the ssa wrapper function
ssa.check.method Validates consistency of the system definition
ssa.d Direct method (D)
ssa.d.diag Direct method (D) for nu-diagonalized systems
ssa.etl Explicit tau-leap method (ETL)
ssa.etl.diag Explicit tau-leap method (ETL) for nu-diagonalized systems
ssa.nutiling Direct method nu-diagonalization mapping
ssa.otl Optimized tau-leap method (OTL)
ssa.otl.diag Optimized tau-leap method (OTL) for nu-diagonalized systems
ssa.plot Simple plotting of ssa output
ssa.run Higher-level interface to the method functions
ssa.terminate Terminates a simulation that was invoked using ssa