Statistical Analysis and Data Display: Heiberger and Holland


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Documentation for package ‘HH’ version 2.1-25

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A C D E F G H I L M N O P Q R S T U V X misc

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HH-package Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland

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.arima.info.names.not.ordered Miscellaneous functions that I wish were in or consistent between S-Plus and R.

-- A --

acf.pacf.plot Coordinated time series and ACF and PCF plots.
acfplot Times series diagnostic plots for a structured set of ARIMA models.
AE.dotplot AE (Adverse Events) dotplot of incidence and relative risk
ae.dotplot AE (Adverse Events) dotplot of incidence and relative risk
AEdotplot AE (Adverse Events) dotplot of incidence and relative risk
aedotplot AE (Adverse Events) dotplot of incidence and relative risk
aeReshapeToLong AE (Adverse Events) dotplot of incidence and relative risk
aicsigplot Times series diagnostic plots for a structured set of ARIMA models.
analysis of covariance Compute and plot oneway analysis of covariance
ancova Compute and plot oneway analysis of covariance
ancova-class Class "ancova" Analysis of Covariance
anova.ancova Compute and plot oneway analysis of covariance
anova.mean ANOVA table from the group sample sizes, means, and standard deviations.
antilogit Logistic function and its inverse.
aov.sufficient Analysis of variance from sufficient statistics for groups.
arima.diag.hh Repair design error in S-Plus arima.diag
arima.model Miscellaneous functions that I wish were in or consistent between S-Plus and R.
arma.loop Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
as.character.arima.model Miscellaneous functions that I wish were in or consistent between S-Plus and R.
as.glht Support functions in R for MMC (mean-mean multiple comparisons) plots.
as.multicomp Support functions in R for MMC (mean-mean multiple comparisons) plots.
as.numeric.positioned Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
as.position Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
as.positioned Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
as.rts Miscellaneous functions that I wish were in or consistent between S-Plus and R.
axis.i2wt specialized axis function for interaction2wt.

-- C --

chisq.curve plot a chisquare or a F-curve.
chisq.observed plot a chisquare or a F-curve.
chisq.setup plot a chisquare or a F-curve.
ci.plot Plot confidence and prediction intervals for simple linear regression
coef.ancova Compute and plot oneway analysis of covariance
coef.arima.HH Miscellaneous functions that I wish were in or consistent between S-Plus and R.
coefficients.ancova Compute and plot oneway analysis of covariance
col.hh Initializing Trellis Displays
covariance Compute and plot oneway analysis of covariance
cp.calc Rearranges and improves the legibility of the output from the stepwise function in S-Plus.

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dchisq.intermediate Intermediate f and chisq functions to simplify writing for both R and S-Plus.
df.intermediate Intermediate f and chisq functions to simplify writing for both R and S-Plus.
diag.arma.loop Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
diag.maybe.null Returns a value for the diagonal of NA and NULL arguments.
do.formula.trellis.xysplom Interprets model formulas for xysplom and extended bwplots

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export.eps Exports a graph to an EPS file.

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F.curve plot a chisquare or a F-curve.
F.observed plot a chisquare or a F-curve.
F.setup plot a chisquare or a F-curve.

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glht.mcp Retain averaging behavior that was previously available in glht.
glht.mmc MMC (mean-mean multiple comparisons) plots.
gof.calculation Calculate Box-Ljung Goodness of Fit for ARIMA models in S-Plus.
gofplot Times series diagnostic plots for a structured set of ARIMA models.
grid.xaxis.hh make x- and y-axis labels
grid.yaxis.hh make x- and y-axis labels
GSremove Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet

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HH Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
hh Resolve filenames relative to the HH directory.
hh.file.DOS Resolve filenames relative to the HH directory.
HH.ROOT.DIR Resolve filenames relative to the HH directory.
HHfile.ROOT.DIR Resolve filenames relative to the HH directory.
HH_regsubsets Display tabular results for Best Subsets Regression.
hov Homogeneity of Variance

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if.R Conditional Execution for R or S-Plus
interaction.positioned interaction method for positioned factors.
interaction2wt Plot all main effects and twoway interactions in a multifactor design
intxplot Interaction plot, with an option to print standard error bars.
is.numeric.positioned Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
is.positioned Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.

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ladder Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
ladder3 Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
legendGrob2wt place separate keys to the left of each row of a trellis
lm.case case statistics for regression analysis
lm.regsubsets Evaluate lm model with highest adjusted $R^2$.
lmatContrast Find the row numbers in the lmat corresponding to the focus factor.
lmatRows Find the row numbers in the lmat corresponding to the focus factor.
lmatRows.mmc.multicomp Find the row numbers in the lmat corresponding to the focus factor.
lmatRows.multicomp Find the row numbers in the lmat corresponding to the focus factor.
logit Logistic function and its inverse.
logrelrisk AE (Adverse Events) dotplot of incidence and relative risk

-- M --

make.xaxis.hh.labels make x- and y-axis labels
make.yaxis.hh.labels make x- and y-axis labels
mcalinfct MCA multiple comparisons analysis (pairwise)
mcp2matrix.993 Retain averaging behavior that was previously available in glht.
mcp2matrix2 Retain averaging behavior that was previously available in glht.
meanslinfct.hh MCA multiple comparisons analysis (pairwise)
MMC MMC (mean-mean multiple comparisons) plots.
mmc MMC (mean-mean multiple comparisons) plots.
mmc.mean MMC (mean-mean multiple comparisons) plots from the sufficient statistics for a one-way design.
model.frame.ancova Compute and plot oneway analysis of covariance
multicomp MMC (mean-mean multiple comparisons) plots.
multicomp.label.change Update a multicomp object by ordering its contrasts.
multicomp.label.change.mmc.multicomp Update a multicomp object by ordering its contrasts.
multicomp.label.change.multicomp Update a multicomp object by ordering its contrasts.
multicomp.mean MMC (mean-mean multiple comparisons) plots from the sufficient statistics for a one-way design.
multicomp.mmc MMC (mean-mean multiple comparisons) plots.
multicomp.mmc.mean MMC (mean-mean multiple comparisons) plots from the sufficient statistics for a one-way design.
multicomp.order Update a multicomp object by ordering its contrasts.
multicomp.reverse Force all comparisons in a "multicomp" object to have the same sign.

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norm.curve plot a normal or a t-curve with both x and z axes.
norm.observed plot a normal or a t-curve with both x and z axes.
norm.outline plot a normal or a t-curve with both x and z axes.
norm.setup plot a normal or a t-curve with both x and z axes.
normal.and.t.dist plot a normal or a t-curve with both x and z axes.
npar.arma Count the number of parameters in an ARIMA model specification.
npar.rarma Count the number of parameters in an ARIMA model specification.
npar.sarma Count the number of parameters in an ARIMA model specification.

-- O --

objip loop through all attached directories looking for pattern
odds.ratio Calculate or plot the odds ratio for a 2x2 table of counts.
orthog.complete Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.
orthog.construct Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.

-- P --

panel.acf Panel functions for tsdiagplot.
panel.ae.dotplot AE (Adverse Events) dotplot of incidence and relative risk
panel.ae.leftplot AE (Adverse Events) dotplot of incidence and relative risk
panel.ae.rightplot AE (Adverse Events) dotplot of incidence and relative risk
panel.ancova Compute and plot oneway analysis of covariance
panel.bwplot.intermediate.hh Panel functions for bwplot.
panel.bwplott Extension to S-Plus trellis to allow transposed plots.
panel.cartesian trellis panel function, with labeled rows and columns and without strip labels.
panel.case case statistics for regression analysis
panel.ci.plot Default Panel Function for ci.plot
panel.dotplot.tb Dotplot with evenly spaced tiebreakers.
panel.gof Panel functions for tsdiagplot.
panel.hov Homogeneity of Variance Plot
panel.interaction2wt Plot all main effects and twoway interactions in a multifactor design
panel.intxplot Interaction plot, with an option to print standard error bars.
panel.pairs.hh Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
panel.std.resid Panel functions for tsdiagplot.
panel.xysplom panel method for xysplom.
partial.corr partial correlations
pchisq.intermediate Intermediate f and chisq functions to simplify writing for both R and S-Plus.
persp.back.wall.x Helper functions for regr2.plot
persp.back.wall.y Helper functions for regr2.plot
persp.floor Helper functions for regr2.plot
persp.plane Helper functions for regr2.plot
pf.intermediate Intermediate f and chisq functions to simplify writing for both R and S-Plus.
plot.ancova Compute and plot oneway analysis of covariance
plot.case case statistics for regression analysis
plot.hov Homogeneity of Variance Plot
plot.matchMMC Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
plot.mmc.multicomp MMC (Mean-mean Multiple Comparisons) plot.
plot.multicomp Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
plot.odds.ratio Calculate or plot the odds ratio for a 2x2 table of counts.
plot.summary_HH_regsubsets Display tabular results for Best Subsets Regression.
pop.vp.hh push and pop a grid viewport, turn clipping off, change scale.
position Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
positioned Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
positioned-class Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
predict.ancova Compute and plot oneway analysis of covariance
print.ancova Compute and plot oneway analysis of covariance
print.arma.loop summary and print and subscript methods for tsdiagplot and related objects.
print.cp.object Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
print.glht.mmc.multicomp Support functions in R for MMC (mean-mean multiple comparisons) plots.
print.mmc.multicomp Support functions in R for MMC (mean-mean multiple comparisons) plots.
print.multicomp Support functions in R for MMC (mean-mean multiple comparisons) plots.
print.positioned Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
print.summary_HH_regsubsets Display tabular results for Best Subsets Regression.
print.tsacfplots summary and print and subscript methods for tsdiagplot and related objects.
print.tsdiagplot Print a "tsdiagplot" object.
print1.tsdiagplot Print a "tsdiagplot" object.
print2.tsdiagplot Print a "tsdiagplot" object.
push.vp.hh push and pop a grid viewport, turn clipping off, change scale.

-- Q --

qchisq.intermediate Intermediate f and chisq functions to simplify writing for both R and S-Plus.
qf.intermediate Intermediate f and chisq functions to simplify writing for both R and S-Plus.

-- R --

rearrange.diag.arma.loop Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
regr1.plot plot x and y, with optional straight line fit and display of squared residuals
regr2.plot 3D plot of z against x and y, with regression plane fit and display of squared residuals.
resid.squares plot squared residuals in inches to match the y-dimension
residplot Times series diagnostic plots for a structured set of ARIMA models.
residual.plots Residual plots for a linear model.

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seqplot Time series plot.
seqplot.forecast seqplot with confidence bands for the forecast region.
seqplot.rts Time series plot.
seqplot.ts Time series plot.
strip.background0 Turn off the coloring in the trellis strip labels. Color 0 is the background color.
strip.interaction2wt Plot all main effects and twoway interactions in a multifactor design
strip.ladder Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
strip.xysplom strip function that is able to place the correlation or regression coefficient into the strip label.
sufficient Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
summary.ancova Compute and plot oneway analysis of covariance
summary.arma.loop summary and print and subscript methods for tsdiagplot and related objects.
summary_HH Display tabular results for Best Subsets Regression.

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t.trellis Interchange the x- and y-axes for an S-Plus trellis object. Interchange the conditioning variables for an R trellis object.
title.grob Miscellaneous functions that I wish were in or consistent between S-Plus and R.
title.trellis Miscellaneous functions that I wish were in or consistent between S-Plus and R.
tsacfplots Coordinated time series and ACF and PCF plots.
tsdiagplot Times series diagnostic plots for a structured set of ARIMA models.

-- U --

unique.positioned Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
units.ts Miscellaneous functions that I wish were in or consistent between S-Plus and R.
unpositioned Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.

-- V --

vcov.sufficient Analysis of variance from sufficient statistics for groups.
vif Calculate the Variance Inflation Factor

-- X --

X.residuals Residuals from the regression of each column of a data.frame against all the other columns.
xysplom scatterplot matrix with potentially different sets of variables on the rows and columns.

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[.arma.loop summary and print and subscript methods for tsdiagplot and related objects.
[.cp.object Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
[.diag.arma.loop summary and print and subscript methods for tsdiagplot and related objects.
[.mmc.multicomp MMC (mean-mean multiple comparisons) plots.
[.positioned Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.