iplot {IDPmisc}R Documentation

Image Scatter Plot for Large Datasets

Description

Produces an image scatter plot of large datasets where the colors encode the density of the points in the scatter plot. Works also with factors.

Usage

iplot(x, y = NULL,
      pixs = 1, zmax = NULL, ztransf = function(x){x},
      colramp = IDPcolorRamp,
      main = NULL, d.main = 1, cex.main = par("cex.main"),
      xlab = NULL, ylab = NULL, cex.lab = 1,
      legend = TRUE, d.legend = 1,
      cex.axis = par("cex.axis"), nlab.xaxis = 5, nlab.yaxis = 5,
      minL.axis = 3, las = 1, border = FALSE, oma = c(3,3,1,0), ...
      )

Arguments

x,y Coordinates of points whose density is to be plotted. If x ist a matrix or a data.frame, the first two column are used as x and y respectively. y must be in this case NULL. x and y may be numeric or factor variable.
pixs Pixelsize in mm.
zmax Maximum number of counts per pixel in the plot. When NULL, the density in the scatter plot is encoded from 0 to maximum number of counts per pixel observed. zmax must be equal or larger than maximum number of counts found. The maximum number of counts per pixel is delivered by the return value.
ztransf Function to transform the number of counts per pixel, which will be mapped by the function in colramp to well defined colors. The user has to make sure that the transformed density lies in the range [0,zmax], where zmax is any positive number (>=2). For examples see ipairs and ilagplot.
colramp Color ramp to encode the number of counts within a pixel.
main Title.
d.main Vertical distance between upper border of scatter plots and the title line in multiples of title height.
cex.main Magnification used for title relative to the current setting of cex.
xlab Label for x-axis.
ylab Label for y-axis.
cex.lab Magnification used for text in axis labels relative to the current setting of cex
legend Logical. When FALSE, no legend is plotted and space is saved in figure region.
d.legend Horizontal distance between right border of scatter plots and legend in multiples of title height.
cex.axis Magnification used for axis annotation relative to the current setting of cex.
nlab.xaxis, nlab.yaxis Approximate number of labels on x- and y-axes respectively.
minL.axis The minimum length of the abbreviations of factor levels, used to label the axes ticks.
las Orientation of labels on axes.
border Logical. When TRUE, a border is drawn around the individual colors in the legend.
oma Outer margin. Cf. par
... Additional arguments to par

Details

The idea of this plot is similar to gplot.hexbin. The hexagons are better suited to reflect the density of points in a plane than the squares used here. Nevertheless squares are, contrary to hexagons, invariant to reflexions at the x- and y-axis and therefore suited for scatter plot matrices and also for plotting factors.

Value

Maximum number of counts per Pixel found.

Note

When you get the error message "Zmax too small! Densiest aereas are out of range!" you must run the function again without specifying zmax. The value returned gives you the minimum value allowed for zmax.

Author(s)

Andreas Ruckstuhl, Rene Locher

See Also

ilagplot, ipairs, Image

Examples

x <-  rnorm(10000)
y <- atan(rnorm(10000,0))
iplot(x,y)
iplot(x,pixs=2)

oma <- c(5,5,0,0)
iplot(iris[,1:2],pixs=4, oma=oma)
iplot(iris[,"Petal.Width"],iris[,"Species"], pixs=4, oma=oma)
iplot(x=iris[,"Species"], y=iris[,"Petal.Width"], pixs=10,border=TRUE,
        xlab="Species",
        ylab="Petal Width",
        main="Iris Species and Petal Width", oma=oma)

iplot(iris$Species,iris$Petal.Width,pixs=3, minL=10, oma=c(3,6,0,0),
      cex.axis=2, cex.lab=2, cex.main= 2, main="Larger fonts",
      mgp=c(4, 1, 0))

[Package IDPmisc version 1.0.01 Index]