HWE2sided {LDtests} | R Documentation |
Calculates conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions, the Haldane 2-sided test as implemented by Wiggington et al (2005) and the 1-sided test for inbreeding.
HWE2sided(geno, qplot = F, title = NULL)
geno |
Vector of genotype counts: no. heterozygotes followed by the nos. homozygotes |
qplot |
If qplot is true the distribution of the null hypothesis is plotted |
title |
Title for the plot |
pval.cond |
Conditional p-value |
pval.H |
2-sided Haldane p-value |
pval.inbreed |
1-sided test for inbreeding |
Alex Lewin
Kulinskaya and Lewin 2008
geno <- c(20,73,7) HWE2sided(geno)