LIMCaliforniaSediment {LIM} | R Documentation |
Linear inverse model specification for the Santa Monica Basin (California) sediment food web as in Eldridge and Jackson (1993).
The Santa Monica Basin is a hypoxic-anoxic basin located near California.
The model contains both chemical and biological species.
The foodweb comprises 7 functional compartments and five external compartments, connected with 32 flows. Units of the flows are mg C/m2/day
The linear inverse model LIMCaliforniaSediment is generated from the file ‘CaliforniaSediment.input’ which can be found in subdirectory /examples/FoodWeb of the packages directory
In this subdirectory you will find many foodweb example input files
These files can be read using Read
and their output processed by
Setup
which will produce a linear inverse problem specification similar to LIMCaliforniaSediment
data(LIMCaliforniaSediment)
a list of matrices, vectors, names and values that specify the linear inverse model problem.
see the return value of Setup
for more information about this list
A more complete description of this structures is in vignette("LIM")
Karline Soetaert <k.soetaert@nioo.knaw.nl> Dick van Oevelen<d.vanoevelen@nioo.knaw.nl> and Henrik Andersson
Eldridge, P.M., Jackson, G.A., 1993. Benthic trophic dynamics in California coastal basin and continental slope communities inferred using inverse analysis. Marine Ecology Progress Series 99, 115-135.
LIMTakapoto
, LIMRigaSummer
and many others
CaliforniaSediment <- Flowmatrix(LIMCaliforniaSediment) plotweb(CaliforniaSediment,main="Santa Monica Basin Benthic web", sub="mgN/m2/day",lab.size=0.8) xr <- LIMCaliforniaSediment$NUnknowns i1 <- 1:(xr/2) i2 <- (xr/2+1):xr Plotranges(LIMCaliforniaSediment,index=i1,lab.cex=0.7,sub="*=unbounded", main="Santa Monica Basin Benthic web, Flowranges - part1") ## Not run: Plotranges(LIMCaliforniaSediment,index=i2,lab.cex=0.7,sub="*=unbounded", main="Santa Monica Basin Benthic web, Flowranges - part2") ## End(Not run)