MCMC Generalised Linear Mixed Models


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Documentation for package ‘MCMCglmm’ version 1.06

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MCMCglmm-package Multivariate Generalised Linear Mixed Models
commutation Commutation Matrix
Ddivergence d-divergence
Dexpressions List of unevaluated expressions for (mixed) partial derivatives of fitness with respect to linear predictors.
Dtensor Tensor of (mixed) partial derivatives
evalDtensor Evaluates a list of (mixed) partial derivatives
inverseA Inverse Relatedness Matrix and Phylogenetic Covariance Matrix
knorm (Mixed) Central Moments of a Multivariate Normal Distribution
KPPM Kronecker Product Permutation Matrix
krzanowski.test Krzanowski's Comparison of Subspaces
kunif Central Moments of a Uniform Distribution
list2bdiag Forms the direct product from a list of matrices
MCMCglmm Multivariate Generalised Linear Mixed Models
PlodiaPO Phenoloxidase measures on caterpillars of the Indian meal moth.
PlodiaR Resistance of Indian meal moth caterpillars to the granulosis virus PiGV.
PlodiaRB Resistance (as a binary trait) of Indian meal moth caterpillars to the granulosis virus PiGV.
plotsubspace Plots covariance matrices
posterior.mode Estimates the mode of a vector using kernel density estimation
prunePed Pedigree pruning
Ptensor Tensor of Sample (Mixed) Central Moments
rbv Random Generation of MVN Breeding Values and Phylogenetic Effects
rIW Random Generation from the Conditional Inverse Wishart Distribution
sm2asreml Converts sparseMatrix to asreml's giv format
Tri2M Lower/Upper Triangle Elements of a Matrix