MIfuns-package {MIfuns} | R Documentation |
Pharmacometric tools for common data preparation tasks, stratified bootstrap resampling of data sets, NONMEM control stream creation/editing, NONMEM model execution, creation of standard and user-defined diagnostic plots, execution and summary of bootstrap and predictive check results, implementation of simulations from posterior parameter distributions, reporting of output tables and creation of a detailed analysis log. All functions are considered stable unless marked as beta.
CLNR | Delete files and directories; log what was deleted to a text file. |
compute.cwres | Compute the conditional weighted residuals (ind.cwres,read.cwres.data,is.cwres.readable). |
CWRES | Generate conditional weighted residual (CWRES) diagnostic plots as a pdf (cwres_1). |
NONR | Run NONMEM and create diagnostic plots. |
PLOTR | Generate diagnostic and/or covariate evaluation plots as a pdf or multiple pngs. |
rlog | Generate a combined run log from multiple NONMEM runs. |
resample.data.frame | Create replicate datasets by stratified sampling with replacement (as.csv.filename,resample.csv.filename). |
metaSub.character | Make multiple, systematic substitutions in text files (as.filename,metaSub.filename). |
CreateParametersForSimulation | Create parameters for simulation from uncertainity. |
miTemporal | Create date, time, and date-time objects with default behaviors appropriate for NMTRAN datasets. |
bsa | Calculate various clinical measurements: body size, etc. (bsa, bmi, ibw, lbm, crcl). |
constant | Test for nesting among factors(nests, nested.in, crosses). |
naInContext | View missing values in a broader context. |
stableMerge | Add keyed data to a dataframe safely. |
css | Calculate One-Compartment Model Properties (acr, cavg, cmax, cmin, ke, tmax, auc). |
covplot | Make "forest plots" of covariate effects, etc. |
forbak | Impute missing vector values(locf, nocb). |
runhead | Check some properties of vectors and data frames(maxChar, prev, sorted). |
bin | Calculate bin sizes and limits for a vector. |
accept | Document acceptance of an R installation (acceptance, packageCheck).
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Package: | MIfuns |
Type: | Package |
Version: | 3.2.9 |
Date: | 2008-10-27 |
License: | GPL |
Developed by Metrum Institute (Bill Knebel, Tim Bergsma, and others). Maintainer: Bill Knebel <billk@metrumrg.com>
MIfuns package available from Metrum Institute website (http://metruminstitute.org/
).