TABR {MIfuns} | R Documentation |
TABR can be used to generate a comma-delimited table of the output from a successful NONMEM run suitable for import into Microsoft Word. TABR can also be used to add 95 analysis of final NONMEM model.
TABR(ProjectDir, i, concurrent = 1, boot = 0, bootres = NULL, btcol = NULL, btcoll = NULL, btcolh = NULL, outname)
ProjectDir |
System path to the directory containing the NONMEM control (*.ctl) streams. |
i |
Control stream number used to generate table file. Should be numeric with no placeholder
zeros to left of number, i.e., "1" not "001".
Example: i=c(1) |
concurrent |
Flag to tell TABR how control streams were executed with (1)- or (0)-sequentially(0).
Flag should be "0" in Windows. Default value is "1". Example: concurrent=1 |
boot |
Flag to describe type of NONMEM run with (0)-normal, (1)-bootstrap, (2)-long runs,
and (3)-bootstrap runs across entire cluster. Flag should be "0" on Windows.
Example: boot=0 |
bootres |
Complete path plus name of bootstrap results file. Default is NULL.
Example: bootres="/Path/to/results/file/filename" |
btcol |
Columns to read from bootres and import into R. Must be numeric vector of numbers.
Example: btcol=c(1:4) |
btcoll |
Column header for bootres column containing lower 95
bootstrap analysis. Must be a character vector. Example: btcoll="P2.5.all" |
btcolh |
Column header for bootres column containing upper 95
bootstrap analysis. Must be a character vector. Example: btcolh="P97.5.all" |
outname |
Name of txt file output by TABR . Run number and "_SumTable.txt" will be appended
to outname variable to create complete file name for txt file output by TABR .
Must be a character vector. Example: outname="/FullPKRes" |
Specific file format required by TABR
for bootres
if 95
are to be added to comma-delimited table file.
bootres
file should be comma-delimited with first row containing headers for the columns
and remaining rows containing bootstrap estimates for each parameter estimated in NONMEM. Columns
should correspond to parameter name, median/average, lower 95
parameter estimated in NONMEM. This should be a summary file generated from the bootstrap analysis of the
NONMEM control stream specified i
.
Developed by Metrum Institute (Bill Knebel, Tim Bergsma, and others).
MIfuns package available from Metrum Institute website (http://metruminstitute.org/
).