PBS Modelling 2.06


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Documentation for package ‘PBSmodelling’ version 2.06

User Guides and Package Vignettes

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A B C D E F G I J L O P R S T U V W

-- --

PBSmodelling-package PBS Modelling

-- A --

addArrows Add Arrows to a Plot Using Relative (0:1) Coordinates
addHistory Create Structures for a New History Widget
addLabel Add a Label to a Plot Using Relative (0:1) Coordinates
addLegend Add a Legend to a Plot Using Relative (0:1) Coordinates

-- B --

backHistory Create Structures for a New History Widget

-- C --

calcFib Calculate Fibonacci Numbers by Several Methods
calcGM Calculate the Geometric Mean, Allowing for Zeroes
calcMin Calculate the Minimum of a User-Defined Function
CCA.qbr Data: Sampled Counts of Quillback Rockfish (Sebastes maliger)
chooseWinVal Choose and Set a String Item in a GUI
cleanProj Launch a GUI for Project File Deletion
cleanWD Launch a GUI for File Deletion
clearAll Remove all R Objects From the Global Environment
clearHistory Create Structures for a New History Widget
clearPBSext Clear File Extension Associations
clearWinVal Remove all Current Widget Variables
closeWin Close GUI Window(s)
compileC Compile a C File into a Shared Library Object
compileDescription Convert and Save a Window Description as a List
convSlashes Convert Slashes from UNIX to DOS
createVector Create a GUI with a Vector Widget
createWin Create a GUI Window

-- D --

declareGUIoptions Declare Option Names that Correspond with Widget Names
doAction Execute Action Created by a Widget
drawBars Draw a Linear Barplot on the Current Plot

-- E --

evalCall Evaluate a Function Call
expandGraph Expand the Plot Area by Adjusting Margins
exportHistory Export a Saved History

-- F --

findPat Search a Character Vector to Find Multiple Patterns
findPrefix Find a Prefix Based on Names of Existing Files
firstHistory Create Structures for a New History Widget
focusWin Set the Focus on a Particular Window
forwHistory Create Structures for a New History Widget

-- G --

genMatrix Generate Test Matrices for plotBubbles
getChoice Choose One String Item from a List of Choices
getGUIoptions Get PBS Options for Widgets
getPBSext Get a Command Associated With a File Name
getPBSoptions Retreive A User Option
getPrefix Get Prefix of System Files with Specified Suffix
getSuffix Get Suffix of System Files with Specified Prefix
getWinAct Retreive the Last Window Action
getWinFun Retrieve Names of Functions Referenced in a Window
getWinVal Retreive Widget Values for Use in R Code
getYes Prompt the User to Choose Yes or No
GT0 Restrict a Numeric Variable to a Positive Value

-- I --

importHistory Import a History List from a File
initHistory Create Structures for a New History Widget
isWhat Identify an Object and Print Information

-- J --

jumpHistory Create Structures for a New History Widget

-- L --

lastHistory Create Structures for a New History Widget
loadC Launch a GUI for Compiling and Loading C Code

-- O --

openExamples Open Example Files from a Package
openFile Open a File with an Associated Program
openPackageFile Open a File from a Package Subdirectory
openProjFiles Open Files with a Common Prefix

-- P --

packList Pack a List with Objects
pad0 Pad Numbers with Leading Zeroes
parseWinFile Convert a Window Description File into a List Object
pause Pause Between Graphics Displays or Other Calculations
PBSmodelling PBS Modelling
pickCol Pick a Colour From a Palette and get the Hexadecimal Code
plotACF Plot Autocorrelation Bars From a Data Frame, Matrix, or Vector
plotAsp Construct a Plot with a Specified Aspect Ratio
plotBubbles Construct a Bubble Plot from a Matrix
plotCsum Plot Cumulative Sum of Data
plotDens Plot Density Curves from a Data Frame, Matrix, or Vector
plotFriedEggs Render a Pairs Plot as Fried Eggs and Beer
plotTrace Plot Trace Lines from a Data Frame, Matrix, or Vector
presentTalk Run an R Presentation
promptOpenFile Display an "Open File" Dialogue
promptSaveFile Display a "Save File" Dialogue
promptWriteOptions Prompt the User to Write Changed Options

-- R --

readList Read a List from a File in PBS Modelling Format
readPBSoptions Read PBS Options from an External File
resetGraph Reset par Values for a Plot
restorePar Get Actual Parameters from Scaled Values
rmHistory Create Structures for a New History Widget
runDemos Interactive GUI for R Demos
runExamples Run GUI Examples Included with PBS Modelling

-- S --

scalePar Scale Parameters to [0,1]
setFileOption Set a PBS File Path Option Interactively
setGUIoptions Set PBS Options from Widget Values
setPathOption Set a PBS Path Option Interactively
setPBSext Set a Command Associated with a File Name Extension
setPBSoptions Set A User Option
setwdGUI Browse for Working Directory and Optionally Find Prefix
setWinAct Add a Window Action to the Saved Action Vector
setWinVal Update Widget Values
show0 Convert Numbers into Text with Specified Decimal Places
showAlert Display a Message in an Alert Window
showArgs Display Expected Widget Arguments
showHelp Display Help Pages for Packages in HTML Browser
showPacks Show Packages Required But Not Installed
showRes Show Results of Expression Represented by Text
showVignettes Display Vignettes for Packages
sortHistory Sort an Active or Saved History

-- T --

testAlpha Test Various Alpha Transparency Values
testCol Display Named Colours Available Based on a Set of Strings
testLty Display Line Types Available
testLwd Display Line Widths
testPch Display Plotting Symbols and Backslash Characters
testWidgets Display Sample GUIs and their Source Code

-- U --

unpackList Unpack List Elements into Variables

-- V --

vbdata Data: Lengths-at-Age for von Bertalanffy Curve
vbpars Data: Initial Parameters for a von Bertalanffy Curve
view View First/Last/Random n Elements/Rows of an Object
viewCode View Package R Code

-- W --

widgets Display Sample GUIs and their Source Code
writeList Write a List to a File in PBS Modelling Format
writePBSoptions Write PBS Options to an External File