plot.phylog.prcomp {PHYLOGR} | R Documentation |
Plots histogram of the eigenvalues for simulated data as returned from a phylog.prcomp object; with vertical bars indicates the values from the original (''real'') data (the one with sim.counter=0).
## S3 method for class 'phylog.prcomp': plot(x, ...)
x |
an object of class phylog.prcomp such as can be obtained from a previous call to prcomp.phylog. |
... |
other parameters to be passed to through to plotting functions (currently not used). |
These histograms are in the spirit of the 'naive' p-values returned from summary.phylog.prcomp; see Details for summary.phylog.prcomp
Ramon Diaz-Uriarte and Theodore Garland, Jr.
Diaz-Uriarte, R., and Garland, T., Jr., in prep. PHYLOGR: an R package for the analysis of comparative data via Monte Carlo simulations and generalized least squares approaches.
prcomp.phylog
, summary.phylog.prcomp
data(SimulExample) ex1.prcomp <- prcomp.phylog(SimulExample[,-11]) # 11th column is a factor options(digits=5) plot(ex1.prcomp)