print.summary.RJaCGH {RJaCGH} | R Documentation |
The list stored in summary.RJaCGH
is printed.
## S3 method for class 'summary.RJaCGH': print(x, ...) ## S3 method for class 'summary.RJaCGH.Chrom': print(x, ...) ## S3 method for class 'summary.RJaCGH.Genome': print(x, ...)
x |
a summary.RJaCGH object |
... |
Additional arguments passed to print |
The summary is printed
Oscar M. Rueda and Ramon Diaz Uriarte
Rueda OM, Diaz-Uriarte R. Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH. PLoS Comput Biol. 2007;3(6):e122
RJaCGH
,
states
, modelAveraging
,
plot.RJaCGH
, trace.plot
y <- c(rnorm(100, 0, 1), rnorm(10, -3, 1), rnorm(20, 3, 1), rnorm(100, 0, 1)) Pos <- sample(x=1:500, size=230, replace=TRUE) Pos <- cumsum(Pos) Chrom <- rep(1:23, rep(10, 23)) jp <- list(sigma.tau.mu=rep(0.5, 5), sigma.tau.sigma.2=rep(0.3, 5), sigma.tau.beta=rep(0.7, 5), tau.split.mu=0.5, tau.split.beta=0.5) fit.chrom <- RJaCGH(y=y, Pos=Pos, Chrom=Chrom, model="Chrom", burnin=10, TOT=100, jump.parameters=jp, k.max = 5) summary(fit.chrom)