genomePlot |
Plot of the genome with probabilities of alteration. |
gm00143 |
Public CGH data of Snijders |
gm01524 |
Public CGH data of Snijders |
gm01535 |
Public CGH data of Snijders |
gm01750 |
Public CGH data of Snijders |
gm02948 |
Public CGH data of Snijders |
gm03134 |
Public CGH data of Snijders |
gm03563 |
Public CGH data of Snijders |
gm03576 |
Public CGH data of Snijders |
gm04435 |
Public CGH data of Snijders |
gm05296 |
Public CGH data of Snijders |
gm07081 |
Public CGH data of Snijders |
gm07408 |
Public CGH data of Snijders |
gm10315 |
Public CGH data of Snijders |
gm13031 |
Public CGH data of Snijders |
gm13330 |
Public CGH data of Snijders |
modelAveraging |
Method for model averaging for RJaCGH objects. |
normal.HMM.likelihood.NH.C |
Likelihood for non-homogeneous hidden Markov model |
plot.pREC_S |
Plot number of probes shared by pairs of arrays |
plot.Q.NH |
Plot transition probabilities |
plot.RJaCGH |
'plot' method for RJaCGH objects |
pREC_A |
Probabilistic Common Regions for copy number alteration. |
pREC_S |
Subgroups of arrays that share common alterations |
print.pREC_A |
Method for printing probabilistic common region. |
print.pREC_S |
Method for printing probabilistic common regions |
print.summary.RJaCGH |
print summary of RJaCGH fit |
Q.NH |
Transition Matrix for non-homogeneous Hidden Markov Model |
relabelStates |
Relabelling of hidden states to biological states of alteration. |
RJaCGH |
Reversible Jump MCMC for the analysis of arrays of CGH |
simulateRJaCGH |
Simulate observations form a hidden Markov model with non-homogeneous transition probabilities. |
smoothMeans |
Smoothed posterior mean |
snijders |
Public CGH data of Snijders |
states |
'states' method for RJaCGH objects |
summary.RJaCGH |
Summarizing RJaCGH models |
trace.plot |
Trace plot for 'RJaCGH' object |