norm {SNPMaP}R Documentation

Transform a SNPMaP object

Description

Quantile normalize or (natural) log the intensities in a 'raw' format SNPMaP object.

Usage

norm(x, Force = FALSE, lowMemory = x@lowMemory, tidy = FALSE, ...)
logIntensities(x, lowMemory = x@lowMemory, tidy = FALSE, ...)

Arguments

x An object of class SNPMaP in 'raw' format.
Force logical; Force=TRUE will allow SNPMaP objects in formats other than 'raw' to be quantile normalized.
lowMemory logical; should the data be stored on disk rather than in memory?
tidy logical; should the old FileDoubleMatrix be unlinked?
... Additional arguments.

Value

An object of class SNPMaP.

See Also

SNPMaP-package


[Package SNPMaP version 1.0.2 Index]