print.repeatedTrain {STAR} | R Documentation |
Print and summary methods
for repeatedTrain
objects.
## S3 method for class 'repeatedTrain': print(x,...) ## S3 method for class 'repeatedTrain': summary(object, responseWindow, acquisitionWindow,...) ## S3 method for class 'summary.repeatedTrain': print(x,...)
x |
a repeatedTrain or a summary.repeatedTrain object. |
object |
a repeatedTrain object |
responseWindow |
a 2 elements vector specifying the begining and the end of the neuron response. |
acquisitionWindow |
a 2 elements vector specifying the begining and
the end of the acquisition. If missing values are obtained
using the floor of the smallest spike time and the
ceiling of the largest one. |
... |
additional arguments passed to function
chisq.test or print . |
print.repeatedTrain
calls plot.repeatedTrain
summary.repeatedTrain
returns a LIST of class
summary.repeatedTrain
with the following components:
nbRepeates |
The number of repetitions. |
acquisitionWindow |
The acquisition window. |
stats |
A matrix with as many rows as repetitions. The first
column contains the total number of spikes generated by the neuron
during a given repeat (this column appears under the heading "nb"
when the object is printed). The second column contains the corresponding
average discharge rate (this column appears under the heading "nu"
when the object is printed). If a responseWindow was specified,
the third column contains the number of spikes generated by the
neuron during the response period and the fourth column contains the
corresponding rate (these column appear under the headings "nbR" and
"nuR", respectively when the object is printed). |
globalPval |
The p value of the chi square test for homogeneity of the total number of spikes generated accross repetitions. Thats a rough stationarity test. |
responsePval |
If a responseWindow was specified, the p
value of the chi square test for homogeneity
of the number of spikes generated within the "response window" accross repetitions. |
Christophe Pouzat christophe.pouzat@gmail.com
as.repeatedTrain
,
is.repeatedTrain
,
plot.repeatedTrain
,
raster
,
psth
## Load the Vanillin responses of the first ## cockroach data set data(CAL1V) ## convert them into repeatedTrain objects ## The stimulus command is on between 4.49 s and 4.99s CAL1V <- lapply(CAL1V,as.repeatedTrain) ## Generate raster plot for the neurons raster(CAL1V[["neuron 1"]],c(4.49,4.99)) plot(CAL1V[["neuron 2"]],c(4.49,4.99)) plot(CAL1V[["neuron 3"]],c(4.49,4.99)) ## Basic summary of neuron 1 summary(CAL1V[["neuron 1"]]) ## Enhanced summary giving a response window between 5 and 5.5s summary(CAL1V[["neuron 1"]],c(5,5.5))