SNP.dat {SimHap} | R Documentation |
SNP.dat
is an example genotypic data set containing single nucleotide polymorphism (SNP) genotypes.
data(SNP.dat)
A data frame with 180 observations on the following 5 variables.
ID
SNP_1
SNP_2
SNP_3
SNP_4
Simulated SNP data for use with pheno.dat
data(SNP.dat) # transforms SNP.dat to an object containing 3 columns # per SNP - additive, dominant and recessive, where genotypes # defined in 'baseline' serve as the baseline genotypes geno.dat <- SNP2Geno(SNP.dat, baseline=c("MM", "11", "GG", "CC")) data(pheno.dat) mymodel <- snp.quant(formula1=HDL~AGE+SBP+factor(SNP_1_add), formula2=HDL~AGE+SBP, geno=geno.dat, pheno=pheno.dat) summary(mymodel)