summary.epiBin {SimHap}R Documentation

Summarizing epidemiological analysis models for binary outcomes

Description

Summary method for objects of class epiBin

Usage

## S3 method for class 'epiBin':
summary(object, ...)
## S3 method for class 'summary.epiBin':
print(x, digits = max(3, getOption("digits") - 3), 
        signif.stars = getOption("show.signif.stars"), ...)

Arguments

object an object of class epiBin, a result of a call to epi.bin.
x an object of class summary.epiBin, the result of a call to summary.epiBin.
digits the number of significant digits to use when printing.
signif.stars logical. If TRUE, ``significance stars" are printed for each coefficient.
... further arguments passed to or from other methods.

Value

summary.epiBin returns an object of class summary.epiBin, a list with components

call the formula call.
terms terms attribute of the formula called in epi.bin.
df.residual the residual degrees of freedom.
df degrees of freedom parameter used in printing the model summary.
coefficients summarized results from fitted model, including odds ratios, confidence intervals and p-values.
residuals as per glm. The working residuals, that is the residuals in the final iteration of the IWLS fit. Since cases with zero weights are omitted, their working residuals are NA.
formula formula1 used in epi.bin.
weights as per glm. The working weights, that is the weights in the final iteration of the IWLS fit.
AIC Akaike Information Criterion for the generalized linear model fit including SNPs.

Author(s)

Pamela A. McCaskie

References

McCaskie, P.A., Carter, K.W. Hazelton, M., Palmer, L.J. (2007) SimHap: A comprehensive modeling framework for epidemiological outcomes and a multiple-imputation approach to haplotypic analysis of population-based data, [online] www.genepi.org.au/simhap.

See Also

epi.bin

Examples


data(pheno.dat)
mymodel <- epi.bin(formula=PLAQUE~AGE+SEX, pheno=pheno.dat)
summary(mymodel)


[Package SimHap version 1.0.0 Index]