A comprehensive modeling framework for epidemiological outcomes and a multiple-imputation approach to haplotypic analysis of population-based data

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Documentation for package ‘SimHap’ version 1.0.0

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epi.bin Epidemiological analysis for binary outcomes
epi.cc.match Epidemiological analysis for matched case-control data
epi.long Epidemiological analysis for longitudinal data
epi.quant Epidemiological analysis for quantitative outcomes
epi.surv Epidemiological analysis for survival data
haplo.bin Haplotype analysis for a binary trait
haplo.cc.match Haplotype analysis for matched case-control data
haplo.long Haplotype analysis for a longitudinal data
haplo.quant Haplotype analysis for a Normally distributed quantitative trait
haplo.surv Haplotype analysis for survival data
infer.haplos Infer haplotype configurations when phase is unknown
infer.haplos.cc Infer haplotype configuration independently in cases and controls
longPheno.dat Example phenotypic, longitudinal data
make.haplo.rare Group rare haplotypes together
pheno.dat Example phenotypic data
prepare.cc Prepare case-control data for inferring haplotypes
print.summary.epiBin Summarizing epidemiological analysis models for binary outcomes
print.summary.epiClogit Summarizing epidemiological analysis models for matched case-control data
print.summary.epiLong Summarizing epidemiological analysis models for longitudinal data
print.summary.epiQuant Summarizing epidemiological analysis models for quantitative outcomes
print.summary.epiSurv Summarizing epidemiological analysis models for survival data
print.summary.hapBin Summarize binary haplotype analysis models
print.summary.hapClogit Summarize haplotype analysis models for matched case-control data
print.summary.hapLong Summarizing single SNP analysis models for longitudinal data
print.summary.hapQuant Summarize quantitative haplotype analysis models
print.summary.hapSurv Summarize haplotype analysis models for survival data
print.summary.snpBin Summarizing Single SNP analysis models
print.summary.snpClogit Summarizing Single SNP analysis models for matched case-control data
print.summary.snpLong Summarizing single SNP analysis models for longitudinal data
print.summary.snpQuant Summarizing single SNP analysis models for quantitative outcomes
print.summary.snpSurv Summarizing Single SNP analysis models for survival data
snp.bin Single SNP analysis for binary outcomes
snp.cc.match Single SNP analysis for matched case-control data
SNP.dat Example genotypic data
snp.long Single SNP analysis for longitudinal data
snp.quant Single SNP analysis for quantitative outcomes
snp.surv Single SNP analysis for survival data
SNP2Geno Convert biallelic SNP data to genotype count data
SNP2Haplo Convert biallelic SNP data to haplo format
SNPlong.dat Example genotypic data for longitudinal analysis
SNPsurv.dat Example genotypic data for survival analysis
summary.epiBin Summarizing epidemiological analysis models for binary outcomes
summary.epiClogit Summarizing epidemiological analysis models for matched case-control data
summary.epiLong Summarizing epidemiological analysis models for longitudinal data
summary.epiQuant Summarizing epidemiological analysis models for quantitative outcomes
summary.epiSurv Summarizing epidemiological analysis models for survival data
summary.hapBin Summarize binary haplotype analysis models
summary.hapClogit Summarize haplotype analysis models for matched case-control data
summary.hapLong Summarizing single SNP analysis models for longitudinal data
summary.hapQuant Summarize quantitative haplotype analysis models
summary.hapSurv Summarize haplotype analysis models for survival data
summary.snpBin Summarizing Single SNP analysis models
summary.snpClogit Summarizing Single SNP analysis models for matched case-control data
summary.snpLong Summarizing single SNP analysis models for longitudinal data
summary.snpQuant Summarizing single SNP analysis models for quantitative outcomes
summary.snpSurv Summarizing Single SNP analysis models for survival data
survPheno.dat Example phenotypic survival data