epi.bin | Epidemiological analysis for binary outcomes |
epi.cc.match | Epidemiological analysis for matched case-control data |
epi.long | Epidemiological analysis for longitudinal data |
epi.quant | Epidemiological analysis for quantitative outcomes |
epi.surv | Epidemiological analysis for survival data |
haplo.bin | Haplotype analysis for a binary trait |
haplo.cc.match | Haplotype analysis for matched case-control data |
haplo.long | Haplotype analysis for a longitudinal data |
haplo.quant | Haplotype analysis for a Normally distributed quantitative trait |
haplo.surv | Haplotype analysis for survival data |
infer.haplos | Infer haplotype configurations when phase is unknown |
infer.haplos.cc | Infer haplotype configuration independently in cases and controls |
longPheno.dat | Example phenotypic, longitudinal data |
make.haplo.rare | Group rare haplotypes together |
pheno.dat | Example phenotypic data |
prepare.cc | Prepare case-control data for inferring haplotypes |
print.summary.epiBin | Summarizing epidemiological analysis models for binary outcomes |
print.summary.epiClogit | Summarizing epidemiological analysis models for matched case-control data |
print.summary.epiLong | Summarizing epidemiological analysis models for longitudinal data |
print.summary.epiQuant | Summarizing epidemiological analysis models for quantitative outcomes |
print.summary.epiSurv | Summarizing epidemiological analysis models for survival data |
print.summary.hapBin | Summarize binary haplotype analysis models |
print.summary.hapClogit | Summarize haplotype analysis models for matched case-control data |
print.summary.hapLong | Summarizing single SNP analysis models for longitudinal data |
print.summary.hapQuant | Summarize quantitative haplotype analysis models |
print.summary.hapSurv | Summarize haplotype analysis models for survival data |
print.summary.snpBin | Summarizing Single SNP analysis models |
print.summary.snpClogit | Summarizing Single SNP analysis models for matched case-control data |
print.summary.snpLong | Summarizing single SNP analysis models for longitudinal data |
print.summary.snpQuant | Summarizing single SNP analysis models for quantitative outcomes |
print.summary.snpSurv | Summarizing Single SNP analysis models for survival data |
snp.bin | Single SNP analysis for binary outcomes |
snp.cc.match | Single SNP analysis for matched case-control data |
SNP.dat | Example genotypic data |
snp.long | Single SNP analysis for longitudinal data |
snp.quant | Single SNP analysis for quantitative outcomes |
snp.surv | Single SNP analysis for survival data |
SNP2Geno | Convert biallelic SNP data to genotype count data |
SNP2Haplo | Convert biallelic SNP data to haplo format |
SNPlong.dat | Example genotypic data for longitudinal analysis |
SNPsurv.dat | Example genotypic data for survival analysis |
summary.epiBin | Summarizing epidemiological analysis models for binary outcomes |
summary.epiClogit | Summarizing epidemiological analysis models for matched case-control data |
summary.epiLong | Summarizing epidemiological analysis models for longitudinal data |
summary.epiQuant | Summarizing epidemiological analysis models for quantitative outcomes |
summary.epiSurv | Summarizing epidemiological analysis models for survival data |
summary.hapBin | Summarize binary haplotype analysis models |
summary.hapClogit | Summarize haplotype analysis models for matched case-control data |
summary.hapLong | Summarizing single SNP analysis models for longitudinal data |
summary.hapQuant | Summarize quantitative haplotype analysis models |
summary.hapSurv | Summarize haplotype analysis models for survival data |
summary.snpBin | Summarizing Single SNP analysis models |
summary.snpClogit | Summarizing Single SNP analysis models for matched case-control data |
summary.snpLong | Summarizing single SNP analysis models for longitudinal data |
summary.snpQuant | Summarizing single SNP analysis models for quantitative outcomes |
summary.snpSurv | Summarizing Single SNP analysis models for survival data |
survPheno.dat | Example phenotypic survival data |