survPheno.dat {SimHap} | R Documentation |
Data on the recurrence times to infection, at the point of insertion of the catheter, for kidney patients using portable dialysis equipment. Catheters may be removed for reasons other than infection, in which case the observation is censored. Each patient has exactly 2 observations.
pheno.dat
is an example phenotypic data set containing biological measures to be used by snp.surv
, haplo.surv
.
data(survPheno.dat)
A data frame with 76 observations on the following 6 variables.
id
time
status
age
sex
disease
This data is the same as the kidney
data from the survival
package, with the frail
parameter eliminated.
McGilchrist and Aisbett, Biometrics 47, 461-66, 1991
data(SNPsurv.dat) # transforms SNPlong.dat to an object containing 3 columns # per SNP - additive, dominant and recessive, where genotypes # defined in 'baseline' serve as the baseline genotypes survGeno.dat <- SNP2Geno(SNPsurv.dat, baseline=c("V2V2", "GG", "CC")) data(survPheno.dat) mymodel <- snp.surv(formula1=Surv(time, status)~age+SNP_1_add, formula2=Surv(time, status)~age, pheno=survPheno.dat, geno=survGeno.dat) summary(mymodel)