A B C D E F G I K M O P R S T W
TIMP-package | a problem solving environment for fitting separable nonlinear models in physics and chemistry applications |
amp | Class "amp" for diagonal matrix model specification. |
amp-class | Class "amp" for diagonal matrix model specification. |
baseIRF | Baseline subtraction from a vector, usually representing an IRF. |
c001 | Fluorescent lifetime imaging microscopy (FLIM) data |
c003 | Fluorescent lifetime imaging microscopy (FLIM) data |
C1 | Ultrafast time-resolved fluorescence data |
C2 | Ultrafast time-resolved fluorescence data |
C3 | Ultrafast time-resolved fluorescence data |
cy005c | Fluorescent lifetime imaging microscopy (FLIM) data |
cy006 | Fluorescent lifetime imaging microscopy (FLIM) data |
dat | Class "dat" for model and data storage |
dat-class | Class "dat" for model and data storage |
denS4 | Time-resolved absorption data |
denS5 | Time-resolved absorption data |
divergeZimage | Plots a matrix with a diverging palette, with the center value of the palettle possible to set |
donorAcceptorTagged | Fluorescent lifetime imaging microscopy (FLIM) data |
donorTagged | Fluorescent lifetime imaging microscopy (FLIM) data |
efit2file | covert 'tim' FORTRAN efit files to plain matrices in ASCII files |
examineFit | Examines the results of a call to fitModel |
fit | Class "fit" to store the results of model fitting associated with all datasets analyzed. |
fit-class | Class "fit" to store the results of model fitting associated with all datasets analyzed. |
fitModel | Performs optimization of (possibly multidataset) models. |
FLIMplots | Functions to plot FLIM results. |
getCLP | Functions to print and return parts of the object returned by the fitting routines. |
getClpindepX | Generic function getClpindepX in Package ‘TIMP’ |
getClpindepX,amp-method | Generic function getClpindepX in Package ‘TIMP’ |
getClpindepX,kin-method | Generic function getClpindepX in Package ‘TIMP’ |
getClpindepX,mass-method | Generic function getClpindepX in Package ‘TIMP’ |
getClpindepX,spec-method | Generic function getClpindepX in Package ‘TIMP’ |
getClpindepX-methods | Generic function getClpindepX in Package ‘TIMP’ |
getCLPList | Functions to print and return parts of the object returned by the fitting routines. |
getData | Functions to print and return parts of the object returned by the fitting routines. |
getdim1 | Functions to print and return parts of the object returned by the fitting routines. |
getdim2 | Functions to print and return parts of the object returned by the fitting routines. |
getResid | For data correction, fits a model (but ignores plotting commands) in order to obtain the SVD of the residuals, which then can be used in data-correction. |
getResiduals | Functions to print and return parts of the object returned by the fitting routines. |
getResults | Functions to print and return parts of the object returned by the fitting routines. |
getSVDData | Functions to print and return parts of the object returned by the fitting routines. |
getSVDResiduals | Functions to print and return parts of the object returned by the fitting routines. |
getTraces | Functions to print and return parts of the object returned by the fitting routines. |
getX | Functions to print and return parts of the object returned by the fitting routines. |
getXList | Functions to print and return parts of the object returned by the fitting routines. |
initModel | Defines the model to be used in analysis. |
kin | Class "kin" for kinetic model storage. |
kin-class | Class "kin" for kinetic model storage. |
kinopt | Class "kinopt" stores options for fitting and plotting kinetic models |
kinopt-class | Class "kinopt" stores options for fitting and plotting kinetic models |
mass | Class "mass" for mass spectrometry model storage. |
mass-class | Class "mass" for mass spectrometry model storage. |
massopt | Class "massopt" stores options for fitting and plotting models for mass spectrometry data |
massopt-class | Class "massopt" stores options for fitting and plotting models for mass spectrometry data |
mea_IRF | Instrument response for fluorescent lifetime imaging microscopy (FLIM) data |
modifyModel | Allows the starting values for parameters associated with a model to be updated with the values found in fitting the model. |
multimodel | Class "multimodel" for storage of multidataset models, data and the results of fitting. |
multimodel-class | Class "multimodel" for storage of multidataset models, data and the results of fitting. |
multitheta | Class "multitheta" that stores a list with one element of class "theta" for each dataset modeled. |
multitheta-class | Class "multitheta" that stores a list with one element of class "theta" for each dataset modeled. |
onls | Functions to print and return parts of the object returned by the fitting routines. |
opt | Class "opt" stores options for fitting and plotting |
opt-class | Class "opt" stores options for fitting and plotting |
outlierCorr | Finds and removes outliers from a datasets |
parEst | Functions to print and return parts of the object returned by the fitting routines. |
plotHistAmp | Functions to plot FLIM results. |
plotHistNormComp | Functions to plot FLIM results. |
plotIntenImage | Functions to plot FLIM results. |
plotNormComp | Functions to plot FLIM results. |
plotSelIntenImage | Functions to plot FLIM results. |
plotTau | Functions to plot FLIM results. |
plotter | Generic function plotter in Package ‘TIMP’ |
plotter,kin-method | Generic function plotter in Package ‘TIMP’ |
plotter,mass-method | Generic function plotter in Package ‘TIMP’ |
plotter,spec-method | Generic function plotter in Package ‘TIMP’ |
plotter-methods | Generic function plotter in Package ‘TIMP’ |
preProcess | Performs preprocessing on data stored as an objects of class dat. |
readclp0 | This function reads in a specification of constraints to zero on the clp. |
readData | This function reads in data the ivo file format |
res | Class "res" to store the results of model fitting associated with a single dataset. |
res-class | Class "res" to store the results of model fitting associated with a single dataset. |
residPart | Generic function residPart in Package ‘TIMP’ |
residPart,amp-method | Generic function residPart in Package ‘TIMP’ |
residPart,kin-method | Generic function residPart in Package ‘TIMP’ |
residPart,mass-method | Generic function residPart in Package ‘TIMP’ |
residPart,spec-method | Generic function residPart in Package ‘TIMP’ |
residPart-methods | Generic function residPart in Package ‘TIMP’ |
spec | Class "spec" for the storage of spectral models. |
spec-class | Class "spec" for the storage of spectral models. |
specopt | Class "specopt" stores options for fitting and plotting spectral models |
specopt-class | Class "specopt" stores options for fitting and plotting spectral models |
sumKinSpecEst | Makes a summary plot of spectra associated with kinetic components alongside a plot showing parameter estimates |
sumnls | Functions to print and return parts of the object returned by the fitting routines. |
target | Ultrafast time-resolved fluorescence data |
theta | Class "theta" for storage of nonlinear parameter estimates |
theta-class | Class "theta" for storage of nonlinear parameter estimates |
TIMP | a problem solving environment for fitting separable nonlinear models in physics and chemistry applications |
writeAverage | Writes the average of scans stored in a file to a new file in the 'ivo' format |