WaveCGH-package |
Finding chromosomal gain/loss regions using wavelet method.
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ACF.plot |
Plot ACF for the fitted residuals |
arrayCGH |
Array CGH data |
BenjaminiHochburg |
Finds significant features using false discovery rate (FDR). |
BreakMeans |
Finds break means in a series using wavelet method. |
BreakMeansChr |
Finds break means in individual chromosomes. |
MeansBreakPoints |
Finds the region means for given break points. |
PlotAllOneModel |
Plots all gain and loss regions in one one plot. |
PlotLattice |
Plots all gain and loss regions in separate plots for chromosomes. |
PlotLatticeOneModel |
Plots all gain and loss regions in separate plots for each chromosome. |
PvalBootMean |
Finds p-values for testing means using bootstrap method. |
PvalBootMeanChr |
Finds p-values for testing means in individual chromosomes. |
PvalBootOneModel |
Finds the p-values for testing means |
SimulateError |
Simulating AR(p) error series. |
SymmetricMA |
Smoothing a series using moving average. |
Unique |
Finding the unique values in the original order. |
WaveCGH |
Finding chromosomal gain/loss regions using wavelet method.
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