Wavelet Changepoint Detection for Array CGH


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Documentation for package ‘WaveCGH’ version 2.01

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WaveCGH-package Finding chromosomal gain/loss regions using wavelet method.
ACF.plot Plot ACF for the fitted residuals
arrayCGH Array CGH data
BenjaminiHochburg Finds significant features using false discovery rate (FDR).
BreakMeans Finds break means in a series using wavelet method.
BreakMeansChr Finds break means in individual chromosomes.
MeansBreakPoints Finds the region means for given break points.
PlotAllOneModel Plots all gain and loss regions in one one plot.
PlotLattice Plots all gain and loss regions in separate plots for chromosomes.
PlotLatticeOneModel Plots all gain and loss regions in separate plots for each chromosome.
PvalBootMean Finds p-values for testing means using bootstrap method.
PvalBootMeanChr Finds p-values for testing means in individual chromosomes.
PvalBootOneModel Finds the p-values for testing means
SimulateError Simulating AR(p) error series.
SymmetricMA Smoothing a series using moving average.
Unique Finding the unique values in the original order.
WaveCGH Finding chromosomal gain/loss regions using wavelet method.