coords.monmonier {adegenet} | R Documentation |
The original implementation of monmonier
in package adegenet returns path coordinates, coords.monmonier
additionally displays identities of the original points of the network, based on original coordinates.
coords.monmonier(x)
x |
an object of class ‘monmonier’. |
Returns a list with elements according to the x$nrun
result of the ‘monmonier’ object.
Corresponding path points are in the same order as in the original object.
run1 (run2, ...) |
for each run, a list containing a matrix giving the original points in the network
(first and second , indicating neighbouring pairs) which are divided by the path (path coordinates are stored in columns x.hw and y.hw . first and second are integers referring to the row numbers in the x$xy matrix of the original ‘monmonier’ object. |
Peter Solymos, Solymos.Peter@aotk.szie.hu, http://www.univet.hu/users/psolymos/personal/
## Not run: if(require(spdep) & require(ade4)){ load(system.file("files/mondata1.rda",package="adegenet")) cn1 <- chooseCN(mondata1$xy,type=2,ask=FALSE) mon1 <- monmonier(mondata1$xy,dist(mondata1$x1),cn1,threshold=2,nrun=3) mon1$run1 mon1$run2 mon1$run3 path.coords <- coords.monmonier(mon1) path.coords } ## End(Not run)