hcut {agricolae} | R Documentation |
It shows dendrogram of a consensus of a tree generated by hclust.
hcut(consensus,h,group,col.text="blue",cex.text=1,...)
consensus |
object consensus |
h |
numeric scalar or vector with heights where the tree should be cut. |
group |
an integer scalar with the desired number of group |
col.text |
color of number consensus |
cex.text |
size of number consensus |
... |
Other parameters of the function plot() in cut() |
hcut returns a data.frame with group memberships and consensus tree.
F. de Mendiburu
library(agricolae) data(pamCIP) # only code rownames(pamCIP)<-substr(rownames(pamCIP),1,6) # groups of clusters output<-consensus(pamCIP,nboot=100) hcut(output,h=0.4,group=5,main="Group 5") # hcut(output,h=0.4,group=8,type="t",edgePar = list(lty=1:2, col=2:1),main="group 8" ,col.text="blue",cex.text=1)