pandit {apTreeshape} | R Documentation |
This set contains two trees extracted from the Pandit Database,cytochromc
and rhodopsin
.
data(cytochromc) data(rhodopsin)
These data are stored as objects of class "treeshape"
.
Cytochromes c (cytC) can be defined as electron-transfer proteins.This data set describes the phylogenetic relationships of cytC of mitochondria and bacteria.
G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors.
Ambler, R. P. (May, 1991) Sequence variability in bacterial cytochromes c. Biochimica et Biophysica Acta, 1058, 42-7, for more details about bacterial cytochromes c.
Attwood T. K. and Findlay J. B. (Feb., 1993) Design of a discriminating fingerprint for G-protein-coupled receptors. Protein Engineering, 6, 176-67, for more details about G-protein-coupled receptors.
## Example tree in Treeshape format data(cytochromc) plot(cytochromc) summary(cytochromc) data(rhodopsin) plot(rhodopsin)