ape-package {ape} | R Documentation |
ape provides functions for reading and manipulating phylogenetic trees and DNA sequences, computing DNA distances, estimating trees with distance-based methods, and a range of methods for comparative analyses and analysis of diversification. Functionalities are also provided for programming new phylogenetic methods.
The complete list of functions can be displayed with
library(help = "splines")
.
More information on ape can be at http://ape.mpl.ird.fr/.
Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel, Gangolf Jobb, Christoph Heibl, Vincent Lefort, Jim Lemon, Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Korbinian Strimmer, Damien de Vienne
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Paradis, E. (2006) Analyses of Phylogenetics and Evolution with R. Springer, New York.
Paradis, E., Claude, J. and Strimmer, K. (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289–290.