print.phylo {ape}R Documentation

Compact Display of a Phylogeny

Description

These functions prints a compact summary of a phylogeny, or a list of, on the console.

The operators [, [[, and $ propagate the class correctly.

Usage

## S3 method for class 'phylo':
print(x, printlen = 6 ,...)
## S3 method for class 'multiPhylo':
print(x, details = FALSE ,...)
## S3 method for class 'multiPhylo':
x[i]
## S3 method for class 'multiPhylo':
x[[i]]
## S3 method for class 'multiPhylo':
x$name
## S3 method for class 'multiPhylo':
str(object, ...)

Arguments

x an object of class "phylo" or "multiPhylo".
object an object of class "multiPhylo".
printlen the number of labels to print (6 by default).
details a logical indicating whether to print information on all trees.
i indices of the tree(s) to select from a list; this may be a vector of integers, logicals, or names.
name a character string specifying the tree to be extracted.
... further arguments passed to or from other methods.

Value

An object of class "phylo" ([[, $) or of class "multiPhylo" ([[), or NULL.

Author(s)

Ben Bolker bolker@zoo.ufl.edu and Emmanuel Paradis Emmanuel.Paradis@mpl.ird.fr

See Also

read.tree, summary.phylo, print for the generic R function


[Package ape version 2.3 Index]