plot-methods {archetypes} | R Documentation |
Plot for two-dimensional data and archetypes.
## S3 method for class 'archetypes': plot (x, y, data.col=gray(0.7), data.pch=19, atypes.col=2, atypes.pch=19, ahull.show=TRUE, ahull.col=atypes.col, chull, chull.col=1, chull.pch=19, adata.show=FALSE, adata.col=3, adata.pch=13, link.col=data.col, ...) ## S3 method for class 'stepArchetypes': plot (x, y, data.col=gray(0.7), data.pch=19, atypes.col=(seq_len(length(x) * length(x[[1]])) + 1), atypes.pch=19, ahull.show=TRUE, ahull.col=atypes.col, ...)
x |
An archetypes or
stepArchetypes object. |
y |
Data matrix or data frame. |
data.col |
Color of data points. |
data.pch |
Type of data points. |
atypes.col |
Color of archetypes points. |
atypes.pch |
Type of archetypes points. |
ahull.show |
Show approximated convex hull. |
ahull.col |
Color of approximated convex hull line. |
chull |
An integer vector giving the indices of the points from
data lying on the convex hull. |
chull.col |
Color of convex hull points. |
chull.pch |
Type of convex hull points. |
adata.show |
Show approximated data with link to the original data. |
adata.col |
Color of approximated data points. |
adata.pch |
Type of approximated data points. |
link.col |
Color of link between approximated and original data points. |
... |
Passed to the underlying plot functions. |
Undefined.
The link between approximated and original data is based on an idea and Matlab source code of Bernard Pailthorpe.