bayesCGH-package | bayesCGH - Empirical bayesian analysis of aCGH data |
bayesCGH | bayesCGH - Empirical bayesian analysis of aCGH data |
beta | Internal functions for the bayesCGH package |
classifyProbes | Internal functions for the bayesCGH package |
ClassifySegList-class | Internal functions for the bayesCGH package |
compareEquivalences | Bayesian comparison of proportions of chromosomal gain and loss between clinical sets. |
cytobandIds | Internal functions for the bayesCGH package |
cytobands | Internal functions for the bayesCGH package |
dim,ClassifySegList-method | Internal functions for the bayesCGH package |
dimnames,ClassifySegList-method | Internal functions for the bayesCGH package |
equivalenceClasses | Internal functions for the bayesCGH package |
find.MCR | Internal functions for the bayesCGH package |
findChangePoints | Internal functions for the bayesCGH package |
length,ClassifySegList-method | Internal functions for the bayesCGH package |
logBetaOverBeta | Internal functions for the bayesCGH package |
logsubgamma | Internal functions for the bayesCGH package |
MLalphas | Internal functions for the bayesCGH package |
MLDirichletPriors | Internal functions for the bayesCGH package |
nudSegmentation | Assigns each segment of each sample to either 'normal', 'up', 'down', 'amplified', or 'deleted'. |
plotProportions | Plots proportions of gains and losses observed in a set of array CGH data. |
proportions | Internal functions for the bayesCGH package |
propsList | Internal functions for the bayesCGH package |
rdirichlet | Internal functions for the bayesCGH package |
rowCount | Internal functions for the bayesCGH package |
selectAmpsDels | Selects regions with high proportions of chromosomal gains and losses. |
selectRegions | Selects regions with high proportions of chromosomal gains and losses. |
show,ClassifySegList-method | Internal functions for the bayesCGH package |
summariseRegions | Internal functions for the bayesCGH package |
summarySelection | Produce summary of selected probes. |
writeSummaries | Writes summaries produced by 'summariseSelection' function to file. |