plot.jags {bayesmix}R Documentation

Plot jags Object

Description

Plots mcmc chains of a jags object.

Usage

## S3 method for class 'jags':
plot(x, variables = NULL, trace = TRUE, density = TRUE,
smooth = TRUE, bwf, num, xlim, auto.layout = TRUE, ask = interactive(), ...)

Arguments

x a jags object.
variables names of variables which shall be plotted. Default are all names of results except those with a column dimension larger than the number of classes k.
trace plot trace of each variable.
density plot density estimate of each variable.
smooth draw a smooth line through trace plots.
bwf bandwidth function for density plots.
num if not all classes of a variable shall be plotted, a subset can be specified.
xlim if not specified, the range of each variable over all classes is taken as default.
auto.layout automatically generate output format.
ask prompt user before each page of plots.
... further arguments for densityplot.

Details

Adapted from plot.mcmc.

Currently only implemented for jags objects with model of class BMMmodel. Otherwise the default plot method for the results of the jags object is called (plot.mcmc).

Author(s)

Bettina Gruen

See Also

plot.mcmc, BMMdiag, BMMposteriori


[Package bayesmix version 0.6-0 Index]