plotclust {biclust}R Documentation

Barplot of Bicluster

Description

Draws a graph to compare the values inside the diffrent biclusters with the values outside the bicluster

Usage

plotclust(res,x,bicluster=TRUE,legende=FALSE,noC=5,wyld=3,Titel="Plotclust",...)

Arguments

x The data matrix
res BiclustResult object if bicluster=TRUE else a normal kcca object.
bicluster If TRUE,res is treated as a BiclustResult object
legende Draws a legend.
noC Number of Clusters drawn
wyld Gives the distance between plot and axis.
Titel Gives the title of the plot.
... Additional plot options

Author(s)

Sebastian Kaiser sebastian.kaiser@stat.uni-muenchen.de

See Also

bubbleplot
for simultaneous representation of biclusters.
parallelCoordinates
for single representation of biclusters as lines of gene or condition profiles.
drawHeatmap
for Heatmap representation of biclusters

Examples


  s2=matrix(rnorm(400),20,20)
  s2[12:16,12:16]=rnorm(25,3,0.3)
  set.seed(1)
  bics <- biclust(s2,BCPlaid(), back.fit = 2, shuffle = 3, fit.model = ~m + a + b,
  iter.startup = 5, iter.layer = 30,  verbose = TRUE)
  plotclust(bics,s2)


[Package biclust version 0.7.1 Index]