writeBiclusterResults {biclust}R Documentation

writeBiclusterResults

Description

Write bicluster results to a file

Usage

writeBiclusterResults(fileName, bicResult, bicName, geneNames, arrayNames, append=FALSE, delimiter=" ")

Arguments

fileName Path to the file were biclusters are written.
bicResult Biclusters results as a Biclust class.
bicName Brief description for the biclustering algorithm used.
geneNames Array of strings with gene (row) names in the analyzed data matrix
arrayNames Array of strings with condition (column) names in the analyzed data matrix
append If true, adds the bicluster results to previous information in the text file, if it exists. Default false.
delimiter delimiter string between gene and condition names. Default " ".

Author(s)

Rodrigo Santamaria rodri@usal.es

Examples

  data(BicatYeast)
  res <- biclust(BicatYeast, method=BCCC(), delta=1.5,  alpha=1, number=10)
  writeBiclusterResults("results.txt", res,"CC with delta 1.5", dimnames(BicatYeast)[1][[1]],dimnames(BicatYeast)[2][[1]])
  

[Package biclust version 0.7.1 Index]