biclustmember {biclust}R Documentation

Draw Heatmap

Description

Draws a membership graph cluster x columns, to show which

Usage

biclustmember(bicResult,x,mid=T,Titel="BiCluster Membership Graph",...)

clustmember(res,x,mid=T,Titel="Cluster Membership Graph",...)

Arguments

x The data matrix
bicResult BiclustResult object with a bicluster result set. If this value is set to NULL, the data matrix is drawn as a heatmap, without any reordering. Default NULL.
res Cluster Result (kcca object)
mid If TRUE, shows the value of the remaining objects inside the cluster value, else shows both aside each other.
Titel Gives the title of the plot
... Additional plot options

Author(s)

Sebastian Kaiser sebastian.kaiser@stat.uni-muenchen.de

See Also

bubbleplot
for simultaneous representation of biclusters.
parallelCoordinates
for single representation of biclusters as lines of gene or condition profiles.
drawHeatmap
for Heatmap representation of biclusters

Examples

  library(vcd)
  s2=matrix(rnorm(400),20,20)
  s2[12:16,12:16]=rnorm(25,3,0.3)
  set.seed(1)
  bics <- biclust(s2,BCPlaid(), back.fit = 2, shuffle = 3, fit.model = ~m + a + b,
  iter.startup = 5, iter.layer = 30,  verbose = TRUE)
  biclustmember(bics,s2)


[Package biclust version 0.7.1 Index]