summary.swap {bqtl}R Documentation

Summarize Gibbs samples for a k-gene model

Description

Calculate marginal posteriors for location, posterior means for coefficients, and the Bayes Factor for k vs k-1 genes

Usage

## S3 method for class 'swap':
summary(object, method=NULL, ncoef=length(sc.obj$alt.coef), nloc=sc.obj$nloc)

Arguments

object The result of swap
method Optional. One of the supported methods, see make.analysis.obj
ncoef Optional. The number of coefficients in the class of models. Typically, 2*nloc for method=="F2" and nloc for all other methods
nloc Optional. The number of loci in the sample space.

Value

A list with components:

loc.posterior A vector of (marginal) posterior odds for each locus compared to a no gene model
coefs Posterior means of coefficients.
ratio A list with components mean, an estimate of the Bayes Factor for k versus k-1 gene models, and var, an estimate of its variance.

Author(s)

Charles C. Berry cberry@ucsd.edu


[Package bqtl version 1.0-24 Index]