catmapdata {catmap}R Documentation

An example data frame for use with catmap

Description

A file for use with catmap containing simulated data.

Usage

data(catmapdata)

Format

A data frame with 5 observations on the following 8 variables.

name
a factor with study name and optionally year of publication. NOTE: if year of publication is included there must be no space between study name and year. A comma or underscore work nicely. Example: Abrams,2001 Peter,2002 Todd,2003 Wei,2007 Yu,2007
study
a numeric vector containing 1 if study is TDT and 2 if case-control
t
a numeric vector containing counts of alleles transmitted in TDT study
nt
a numeric vector containing counts of alleles not transmitted in TDT study
caserisk
a numeric vector containing counts of risk alleles in cases
controlrisk
a numeric vector containing counts of risk alleles in controls
casenotrisk
a numeric vector containing counts of non-risk alleles in cases
controlnotrisk
a numeric vector containing counts of non-risk alleles in controls

Details

The header must be part of the file and either 0 or NA must be included for data not relevant for the particular study. For example, using a TDT study the caserisk, controlrisk, casenotrisk and controlnotrisk must have values of either 0 or NA.

Author(s)

Kristin K. Nicodemus, kristin.nicodemus@well.ox.ac.uk

See Also

catmap.forest, catmap.sense, catmap.cumulative, catmap.funnel.

Examples

data(catmapdata)

[Package catmap version 1.5 Index]